EPI-103_S27_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 7835836 lines in total Total number of methylation call strings processed: 15671672 Final Cytosine Methylation Report ================================= Total number of C's analysed: 183501406 Total methylated C's in CpG context: 6658001 Total methylated C's in CHG context: 852229 Total methylated C's in CHH context: 1574350 Total C to T conversions in CpG context: 18809270 Total C to T conversions in CHG context: 36884209 Total C to T conversions in CHH context: 118723347 C methylated in CpG context: 26.1% C methylated in CHG context: 2.3% C methylated in CHH context: 1.3%