/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-103_S27_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-103_S27_L005_R2_001_val_2.fq.gz
Data processed at 05:17 on 2019-12-21
Alignment Stats
Sequence pairs analysed in total
20349659
Paired-end alignments with a unique best hit
9095592
Pairs without alignments under any condition
9572011
Pairs that did not map uniquely
1682056
Genomic sequence context not extractable (edges of chromosomes)
1
Cytosine Methylation
Total C's analysed
289949317
Methylated C's in CpG context
9619421
Methylated C's in CHG context
1310642
Methylated C's in CHH context
2350411
Methylated C's in Unknown context
40612
Unmethylated C's in CpG context
31065297
Unmethylated C's in CHG context
59905410
Unmethylated C's in CHH context
185698136
Unmethylated C's in Unknown context
609374
Percentage methylation (CpG context)
23.6%
Percentage methylation (CHG context)
2.1%
Percentage methylation (CHH context)
1.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4509438
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4586153
original bottom strand
Deduplication
Alignments analysed
9095591
Unique alignments
7835836
Duplicates removed
1259755
Duplicated alignments were found at 632529 different positions
