/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-44_S41_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-44_S41_L005_R2_001_val_2.fq.gz
Data processed at 05:39 on 2019-12-21
Alignment Stats
Sequence pairs analysed in total
13762658
Paired-end alignments with a unique best hit
6084805
Pairs without alignments under any condition
6118468
Pairs that did not map uniquely
1559385
Genomic sequence context not extractable (edges of chromosomes)
1
Cytosine Methylation
Total C's analysed
170813493
Methylated C's in CpG context
8105964
Methylated C's in CHG context
922535
Methylated C's in CHH context
2562650
Methylated C's in Unknown context
43087
Unmethylated C's in CpG context
16050613
Unmethylated C's in CHG context
35418280
Unmethylated C's in CHH context
107753451
Unmethylated C's in Unknown context
349691
Percentage methylation (CpG context)
33.6%
Percentage methylation (CHG context)
2.5%
Percentage methylation (CHH context)
2.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3020647
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
3064157
original bottom strand
Deduplication
Alignments analysed
6084804
Unique alignments
4031044
Duplicates removed
2053760
Duplicated alignments were found at 1305099 different positions
