EPI-43_S40_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 6420611 lines in total Total number of methylation call strings processed: 12841222 Final Cytosine Methylation Report ================================= Total number of C's analysed: 128026299 Total methylated C's in CpG context: 5689722 Total methylated C's in CHG context: 671794 Total methylated C's in CHH context: 2537937 Total C to T conversions in CpG context: 11970270 Total C to T conversions in CHG context: 25906277 Total C to T conversions in CHH context: 81250299 C methylated in CpG context: 32.2% C methylated in CHG context: 2.5% C methylated in CHH context: 3.0%