CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 102759 146545 41.22 249304 2 98877 164256 37.58 263133 3 95793 145623 39.68 241416 4 101138 121200 45.49 222338 5 98007 106528 47.92 204535 6 101243 87448 53.66 188691 7 112590 86471 56.56 199061 8 53169 97842 35.21 151011 9 47173 91478 34.02 138651 10 46895 88981 34.51 135876 11 47955 91515 34.38 139470 12 47412 92980 33.77 140392 13 46494 94261 33.03 140755 14 44207 94591 31.85 138798 15 43769 96595 31.18 140364 16 40502 95883 29.70 136385 17 39038 93556 29.44 132594 18 39563 95474 29.30 135037 19 39348 96497 28.97 135845 20 39964 96748 29.23 136712 21 39689 98170 28.79 137859 22 39310 95820 29.09 135130 23 39161 95312 29.12 134473 24 38770 96629 28.63 135399 25 38327 95363 28.67 133690 26 38174 94130 28.85 132304 27 38230 97000 28.27 135230 28 39413 96482 29.00 135895 29 38321 96743 28.37 135064 30 37675 96007 28.18 133682 31 38263 94385 28.85 132648 32 37814 92432 29.03 130246 33 37665 93184 28.79 130849 34 38433 93146 29.21 131579 35 37520 92995 28.75 130515 36 37272 93732 28.45 131004 37 36161 91673 28.29 127834 38 35868 90917 28.29 126785 39 37380 93191 28.63 130571 40 36920 91073 28.85 127993 41 36303 91080 28.50 127383 42 37091 92899 28.53 129990 43 36487 90865 28.65 127352 44 35800 90223 28.41 126023 45 36715 89369 29.12 126084 46 36764 90440 28.90 127204 47 36150 88574 28.98 124724 48 35643 88792 28.64 124435 49 36678 88545 29.29 125223 50 35340 89178 28.38 124518 51 35521 88409 28.66 123930 52 35985 90468 28.46 126453 53 34276 86107 28.47 120383 54 33982 85516 28.44 119498 55 33736 82784 28.95 116520 56 33205 81999 28.82 115204 57 33333 83207 28.60 116540 58 33702 82871 28.91 116573 59 33531 81416 29.17 114947 60 32845 81352 28.76 114197 61 32935 80407 29.06 113342 62 32202 80381 28.60 112583 63 31653 79378 28.51 111031 64 31258 78754 28.41 110012 65 31480 78273 28.68 109753 66 31849 78930 28.75 110779 67 31321 76488 29.05 107809 68 30374 76304 28.47 106678 69 30066 75070 28.60 105136 70 30204 74485 28.85 104689 71 28902 73703 28.17 102605 72 28833 73188 28.26 102021 73 28409 71261 28.50 99670 74 28377 70928 28.58 99305 75 27811 71153 28.10 98964 76 27567 69950 28.27 97517 77 27836 69043 28.73 96879 78 27537 69645 28.34 97182 79 27328 68072 28.65 95400 80 26292 67915 27.91 94207 81 26183 67982 27.81 94165 82 25864 66027 28.15 91891 83 26020 66496 28.12 92516 84 25793 66281 28.01 92074 85 25407 64809 28.16 90216 86 24652 63753 27.89 88405 87 24052 62897 27.66 86949 88 24141 62961 27.72 87102 89 23578 61876 27.59 85454 90 23880 61881 27.84 85761 91 23152 60156 27.79 83308 92 22753 59872 27.54 82625 93 22929 60011 27.65 82940 94 22756 58832 27.89 81588 95 22465 58477 27.75 80942 96 22267 58991 27.40 81258 97 21753 56380 27.84 78133 98 20316 53215 27.63 73531 99 15856 41817 27.49 57673 100 21003 52736 28.48 73739 101 19883 52913 27.31 72796 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 135521 195395 40.95 330916 2 75778 186471 28.90 262249 3 31610 183565 14.69 215175 4 16840 184642 8.36 201482 5 11057 166209 6.24 177266 6 10575 155045 6.39 165620 7 6638 197630 3.25 204268 8 2961 215108 1.36 218069 9 2453 205844 1.18 208297 10 2458 197513 1.23 199971 11 2567 200574 1.26 203141 12 2345 198432 1.17 200777 13 2159 192770 1.11 194929 14 2119 194559 1.08 196678 15 2104 198751 1.05 200855 16 1778 198508 0.89 200286 17 1801 197687 0.90 199488 18 1705 195674 0.86 197379 19 1744 195482 0.88 197226 20 1835 206744 0.88 208579 21 1827 207480 0.87 209307 22 2006 203931 0.97 205937 23 1946 208927 0.92 210873 24 1878 209107 0.89 210985 25 1836 203096 0.90 204932 26 2277 205358 1.10 207635 27 1860 207732 0.89 209592 28 1875 206771 0.90 208646 29 2085 208455 0.99 210540 30 1809 210451 0.85 212260 31 1954 203732 0.95 205686 32 1946 207389 0.93 209335 33 2017 207312 0.96 209329 34 2003 204388 0.97 206391 35 2207 205149 1.06 207356 36 2025 204316 0.98 206341 37 1961 198915 0.98 200876 38 2264 202760 1.10 205024 39 2074 200882 1.02 202956 40 1969 200190 0.97 202159 41 1972 199356 0.98 201328 42 2074 199648 1.03 201722 43 2005 195402 1.02 197407 44 1997 197957 1.00 199954 45 2148 196491 1.08 198639 46 2148 194436 1.09 196584 47 2204 194453 1.12 196657 48 2088 197683 1.05 199771 49 2138 191791 1.10 193929 50 2261 191498 1.17 193759 51 2240 192889 1.15 195129 52 2225 190823 1.15 193048 53 2195 188441 1.15 190636 54 2210 189067 1.16 191277 55 2241 186760 1.19 189001 56 2263 187462 1.19 189725 57 2198 185844 1.17 188042 58 2274 183380 1.22 185654 59 2331 184582 1.25 186913 60 2135 183013 1.15 185148 61 2165 180009 1.19 182174 62 2308 180703 1.26 183011 63 2259 178183 1.25 180442 64 2259 177403 1.26 179662 65 2518 176968 1.40 179486 66 2253 172694 1.29 174947 67 2153 168957 1.26 171110 68 2389 169866 1.39 172255 69 2109 168112 1.24 170221 70 2086 164096 1.26 166182 71 2125 163393 1.28 165518 72 2029 161926 1.24 163955 73 2033 160700 1.25 162733 74 2278 159240 1.41 161518 75 1984 159068 1.23 161052 76 1912 153745 1.23 155657 77 2154 154088 1.38 156242 78 2037 152966 1.31 155003 79 1943 149386 1.28 151329 80 1985 148436 1.32 150421 81 1926 147088 1.29 149014 82 1976 143432 1.36 145408 83 2010 146637 1.35 148647 84 1911 145180 1.30 147091 85 1944 143496 1.34 145440 86 2016 143326 1.39 145342 87 1936 143672 1.33 145608 88 1960 139046 1.39 141006 89 1907 137540 1.37 139447 90 1889 137585 1.35 139474 91 1837 135732 1.34 137569 92 1970 136172 1.43 138142 93 1985 133313 1.47 135298 94 1867 131361 1.40 133228 95 1941 129576 1.48 131517 96 1959 128907 1.50 130866 97 1863 117183 1.56 119046 98 1717 107858 1.57 109575 99 1082 69636 1.53 70718 100 1270 70285 1.77 71555 101 2705 118108 2.24 120813 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 152158 260525 36.87 412683 2 77832 283581 21.54 361413 3 40067 329028 10.86 369095 4 34225 346261 9.00 380486 5 32971 407530 7.48 440501 6 26554 440542 5.68 467096 7 20900 566984 3.56 587884 8 15185 615124 2.41 630309 9 11058 568690 1.91 579748 10 10744 551949 1.91 562693 11 13531 552698 2.39 566229 12 11141 560792 1.95 571933 13 12342 571876 2.11 584218 14 13941 585161 2.33 599102 15 11628 598997 1.90 610625 16 11259 603914 1.83 615173 17 13738 608818 2.21 622556 18 11022 630183 1.72 641205 19 11190 641703 1.71 652893 20 13299 659511 1.98 672810 21 11180 659693 1.67 670873 22 12083 660606 1.80 672689 23 13899 661661 2.06 675560 24 11498 659081 1.71 670579 25 12265 660947 1.82 673212 26 14345 665123 2.11 679468 27 11667 669406 1.71 681073 28 11373 670074 1.67 681447 29 13919 668314 2.04 682233 30 11505 658942 1.72 670447 31 11907 651321 1.80 663228 32 13284 652992 1.99 666276 33 11688 649836 1.77 661524 34 12747 652151 1.92 664898 35 13905 645319 2.11 659224 36 11578 651107 1.75 662685 37 11187 643996 1.71 655183 38 13457 645190 2.04 658647 39 11182 639052 1.72 650234 40 11171 635095 1.73 646266 41 13399 636070 2.06 649469 42 11715 638034 1.80 649749 43 12096 629814 1.88 641910 44 12967 632302 2.01 645269 45 11503 623360 1.81 634863 46 11437 623700 1.80 635137 47 12935 618863 2.05 631798 48 10899 616006 1.74 626905 49 11178 608207 1.80 619385 50 12843 603242 2.08 616085 51 10632 595267 1.75 605899 52 11508 589776 1.91 601284 53 12634 584298 2.12 596932 54 11059 582382 1.86 593441 55 11211 578199 1.90 589410 56 12897 574893 2.19 587790 57 10581 578866 1.80 589447 58 11190 575153 1.91 586343 59 12747 573879 2.17 586626 60 10222 566162 1.77 576384 61 10865 561079 1.90 571944 62 12096 554285 2.14 566381 63 10209 548851 1.83 559060 64 11212 542987 2.02 554199 65 12113 537981 2.20 550094 66 10031 533108 1.85 543139 67 10367 529276 1.92 539643 68 11789 525670 2.19 537459 69 9703 522537 1.82 532240 70 10009 517127 1.90 527136 71 11342 513546 2.16 524888 72 9535 510405 1.83 519940 73 10688 500997 2.09 511685 74 11130 500022 2.18 511152 75 9498 495327 1.88 504825 76 9378 493673 1.86 503051 77 11324 488015 2.27 499339 78 8931 483707 1.81 492638 79 9286 479576 1.90 488862 80 10630 475308 2.19 485938 81 9147 467786 1.92 476933 82 9735 461508 2.07 471243 83 10911 462194 2.31 473105 84 9100 456438 1.95 465538 85 8929 448667 1.95 457596 86 10280 443897 2.26 454177 87 8774 440182 1.95 448956 88 8432 435683 1.90 444115 89 10217 430484 2.32 440701 90 8536 428450 1.95 436986 91 8728 422786 2.02 431514 92 9425 419586 2.20 429011 93 8187 416082 1.93 424269 94 8283 409801 1.98 418084 95 9497 403661 2.30 413158 96 7877 395522 1.95 403399 97 7618 385975 1.94 393593 98 8534 357548 2.33 366082 99 4900 247463 1.94 252363 100 5696 218905 2.54 224601 101 8693 362770 2.34 371463 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 72569 75367 49.05 147936 2 62023 62493 49.81 124516 3 67200 71295 48.52 138495 4 61156 79403 43.51 140559 5 26791 102007 20.80 128798 6 16510 55389 22.96 71899 7 14478 58092 19.95 72570 8 15047 53049 22.10 68096 9 13196 46589 22.07 59785 10 14449 51574 21.88 66023 11 15488 50008 23.65 65496 12 14948 48305 23.63 63253 13 15305 46694 24.69 61999 14 15982 48000 24.98 63982 15 15670 44371 26.10 60041 16 14736 42384 25.80 57120 17 17136 45878 27.19 63014 18 16897 44630 27.46 61527 19 16203 43391 27.19 59594 20 15090 41929 26.46 57019 21 15832 40681 28.01 56513 22 15633 41748 27.24 57381 23 15050 40168 27.26 55218 24 13841 37836 26.78 51677 25 15273 40191 27.54 55464 26 14307 38044 27.33 52351 27 14931 38583 27.90 53514 28 13725 36714 27.21 50439 29 14644 38214 27.70 52858 30 13888 35812 27.94 49700 31 13085 36288 26.50 49373 32 12735 34514 26.95 47249 33 14859 35147 29.71 50006 34 13774 36760 27.26 50534 35 16522 39027 29.74 55549 36 13920 34582 28.70 48502 37 14122 35613 28.39 49735 38 12657 33501 27.42 46158 39 13197 33617 28.19 46814 40 14225 33389 29.88 47614 41 12722 32814 27.94 45536 42 12786 33774 27.46 46560 43 12542 32671 27.74 45213 44 11893 32072 27.05 43965 45 14639 35290 29.32 49929 46 11424 29343 28.02 40767 47 11878 29586 28.65 41464 48 11927 30347 28.21 42274 49 11492 30205 27.56 41697 50 10963 28599 27.71 39562 51 10858 28255 27.76 39113 52 10842 28643 27.46 39485 53 11197 27647 28.83 38844 54 10795 27839 27.94 38634 55 11114 28035 28.39 39149 56 10128 27166 27.16 37294 57 10681 27896 27.69 38577 58 10411 27098 27.76 37509 59 10160 25221 28.72 35381 60 10513 25979 28.81 36492 61 9236 25127 26.88 34363 62 9450 24338 27.97 33788 63 9933 24765 28.63 34698 64 9467 24232 28.09 33699 65 9189 23050 28.50 32239 66 9680 23970 28.77 33650 67 8881 24427 26.66 33308 68 9908 24810 28.54 34718 69 8864 22609 28.16 31473 70 8287 22064 27.30 30351 71 8653 21888 28.33 30541 72 8109 21340 27.54 29449 73 8269 21575 27.71 29844 74 7560 20731 26.72 28291 75 7706 20606 27.22 28312 76 7920 20114 28.25 28034 77 7567 19612 27.84 27179 78 7759 19942 28.01 27701 79 7378 19502 27.45 26880 80 7353 19344 27.54 26697 81 7197 19185 27.28 26382 82 7265 19167 27.49 26432 83 7316 18349 28.51 25665 84 7791 20320 27.72 28111 85 6861 18748 26.79 25609 86 6843 18271 27.25 25114 87 6938 17677 28.19 24615 88 6810 17538 27.97 24348 89 7174 17951 28.55 25125 90 7052 18018 28.13 25070 91 6560 17278 27.52 23838 92 6393 16806 27.56 23199 93 6421 17034 27.38 23455 94 6820 16974 28.66 23794 95 6489 16639 28.06 23128 96 6285 16610 27.45 22895 97 6907 17216 28.63 24123 98 6235 15122 29.19 21357 99 5563 0 100.00 5563 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 19035 95803 16.58 114838 2 19335 97678 16.52 117013 3 17742 97838 15.35 115580 4 19278 105487 15.45 124765 5 1816 193027 0.93 194843 6 1417 235790 0.60 237207 7 850 129463 0.65 130313 8 892 138571 0.64 139463 9 738 114399 0.64 115137 10 798 109177 0.73 109975 11 1045 147741 0.70 148786 12 858 117293 0.73 118151 13 876 115979 0.75 116855 14 880 109557 0.80 110437 15 837 106595 0.78 107432 16 761 100124 0.75 100885 17 864 105550 0.81 106414 18 978 93999 1.03 94977 19 790 92367 0.85 93157 20 734 91236 0.80 91970 21 971 87025 1.10 87996 22 778 94186 0.82 94964 23 739 95129 0.77 95868 24 636 84499 0.75 85135 25 693 85568 0.80 86261 26 762 89749 0.84 90511 27 721 84241 0.85 84962 28 656 80940 0.80 81596 29 697 86165 0.80 86862 30 699 83146 0.83 83845 31 619 78846 0.78 79465 32 642 80420 0.79 81062 33 676 94994 0.71 95670 34 566 78557 0.72 79123 35 639 81792 0.78 82431 36 613 82390 0.74 83003 37 598 74812 0.79 75410 38 701 79046 0.88 79747 39 584 73713 0.79 74297 40 568 73466 0.77 74034 41 568 70548 0.80 71116 42 548 67288 0.81 67836 43 575 69574 0.82 70149 44 533 68638 0.77 69171 45 543 64777 0.83 65320 46 570 65402 0.86 65972 47 563 66252 0.84 66815 48 551 64012 0.85 64563 49 564 66354 0.84 66918 50 537 64170 0.83 64707 51 507 60506 0.83 61013 52 531 59516 0.88 60047 53 527 65745 0.80 66272 54 510 60644 0.83 61154 55 479 59745 0.80 60224 56 509 60386 0.84 60895 57 604 57424 1.04 58028 58 468 56246 0.83 56714 59 511 58503 0.87 59014 60 535 56127 0.94 56662 61 471 55872 0.84 56343 62 455 57615 0.78 58070 63 480 56149 0.85 56629 64 432 52590 0.81 53022 65 452 54647 0.82 55099 66 393 50863 0.77 51256 67 400 54888 0.72 55288 68 404 52862 0.76 53266 69 394 52216 0.75 52610 70 409 51754 0.78 52163 71 435 52723 0.82 53158 72 367 49535 0.74 49902 73 378 48530 0.77 48908 74 383 50097 0.76 50480 75 350 47378 0.73 47728 76 326 46292 0.70 46618 77 392 49079 0.79 49471 78 340 44931 0.75 45271 79 360 45397 0.79 45757 80 339 44417 0.76 44756 81 324 43157 0.75 43481 82 319 42350 0.75 42669 83 298 43037 0.69 43335 84 323 41435 0.77 41758 85 339 45694 0.74 46033 86 333 41303 0.80 41636 87 297 41436 0.71 41733 88 307 39479 0.77 39786 89 325 41131 0.78 41456 90 371 41085 0.89 41456 91 362 42133 0.85 42495 92 323 39852 0.80 40175 93 329 37828 0.86 38157 94 301 37372 0.80 37673 95 343 39091 0.87 39434 96 327 36537 0.89 36864 97 297 36627 0.80 36924 98 250 36158 0.69 36408 99 214 0 100.00 214 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 27535 126166 17.91 153701 2 22635 103029 18.01 125664 3 23234 105404 18.06 128638 4 22599 102194 18.11 124793 5 5032 208309 2.36 213341 6 5072 285110 1.75 290182 7 5135 390117 1.30 395252 8 5507 381942 1.42 387449 9 5956 359197 1.63 365153 10 5473 367769 1.47 373242 11 5655 360794 1.54 366449 12 5508 338214 1.60 343722 13 5180 347603 1.47 352783 14 5196 347310 1.47 352506 15 5165 356731 1.43 361896 16 4786 342623 1.38 347409 17 4991 338926 1.45 343917 18 5075 339294 1.47 344369 19 4600 314871 1.44 319471 20 4799 330556 1.43 335355 21 4788 314339 1.50 319127 22 4707 302696 1.53 307403 23 4637 296885 1.54 301522 24 4330 286208 1.49 290538 25 4500 284540 1.56 289040 26 4674 283151 1.62 287825 27 4894 303833 1.59 308727 28 4279 288173 1.46 292452 29 4260 280676 1.50 284936 30 4486 271825 1.62 276311 31 4078 268084 1.50 272162 32 3997 260946 1.51 264943 33 4229 257904 1.61 262133 34 4115 255935 1.58 260050 35 4535 265374 1.68 269909 36 4016 261388 1.51 265404 37 3801 258149 1.45 261950 38 4097 271626 1.49 275723 39 4068 248300 1.61 252368 40 3884 260485 1.47 264369 41 3750 245085 1.51 248835 42 3837 250701 1.51 254538 43 3882 237977 1.61 241859 44 3759 234795 1.58 238554 45 3787 237153 1.57 240940 46 3461 239080 1.43 242541 47 3632 233199 1.53 236831 48 3634 227602 1.57 231236 49 3458 232942 1.46 236400 50 3538 227327 1.53 230865 51 3364 222602 1.49 225966 52 3281 211694 1.53 214975 53 3178 211143 1.48 214321 54 3048 206766 1.45 209814 55 3198 214376 1.47 217574 56 3017 205782 1.44 208799 57 3014 213231 1.39 216245 58 2823 204897 1.36 207720 59 3048 196576 1.53 199624 60 2998 203496 1.45 206494 61 3019 193619 1.54 196638 62 2892 191144 1.49 194036 63 2898 193331 1.48 196229 64 2788 185544 1.48 188332 65 2795 189053 1.46 191848 66 2750 182704 1.48 185454 67 2471 182280 1.34 184751 68 2741 188448 1.43 191189 69 2633 183005 1.42 185638 70 2478 175341 1.39 177819 71 2621 173452 1.49 176073 72 2547 172322 1.46 174869 73 2499 170541 1.44 173040 74 2509 171388 1.44 173897 75 2405 169173 1.40 171578 76 2245 163463 1.35 165708 77 2482 162488 1.50 164970 78 2446 162315 1.48 164761 79 2310 165258 1.38 167568 80 2392 158821 1.48 161213 81 2415 158330 1.50 160745 82 2263 156478 1.43 158741 83 2297 155534 1.46 157831 84 2350 154319 1.50 156669 85 2159 152120 1.40 154279 86 2176 151024 1.42 153200 87 2186 149892 1.44 152078 88 2059 144947 1.40 147006 89 2150 143747 1.47 145897 90 2124 143295 1.46 145419 91 2080 141706 1.45 143786 92 1981 140365 1.39 142346 93 1953 138786 1.39 140739 94 1854 137323 1.33 139177 95 1968 134268 1.44 136236 96 1897 132444 1.41 134341 97 1814 132150 1.35 133964 98 1642 126992 1.28 128634 99 1130 0 100.00 1130