CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 72266 102112 41.44 174378 2 69767 111275 38.54 181042 3 67270 97898 40.73 165168 4 71486 81037 46.87 152523 5 68857 71112 49.19 139969 6 70169 59208 54.24 129377 7 78133 60098 56.52 138231 8 38115 66374 36.48 104489 9 33419 61730 35.12 95149 10 33834 59631 36.20 93465 11 35504 61936 36.44 97440 12 34806 63094 35.55 97900 13 34318 64994 34.56 99312 14 32549 64867 33.41 97416 15 32237 65839 32.87 98076 16 29902 65221 31.44 95123 17 28303 63379 30.87 91682 18 29036 65387 30.75 94423 19 28664 65489 30.44 94153 20 29035 66286 30.46 95321 21 28868 66914 30.14 95782 22 28177 65898 29.95 94075 23 28667 65288 30.51 93955 24 27376 66060 29.30 93436 25 27626 64968 29.84 92594 26 27531 65041 29.74 92572 27 27558 66219 29.39 93777 28 28429 65368 30.31 93797 29 27383 66481 29.17 93864 30 27270 65636 29.35 92906 31 27627 64281 30.06 91908 32 27343 63519 30.09 90862 33 27287 63458 30.07 90745 34 28023 63497 30.62 91520 35 27374 63502 30.12 90876 36 27183 64166 29.76 91349 37 26256 62425 29.61 88681 38 26129 62173 29.59 88302 39 26790 63706 29.60 90496 40 26443 61773 29.98 88216 41 26160 62021 29.67 88181 42 26833 63241 29.79 90074 43 26329 61755 29.89 88084 44 25975 61647 29.64 87622 45 26380 60967 30.20 87347 46 26652 61640 30.19 88292 47 26122 60395 30.19 86517 48 25442 60475 29.61 85917 49 26294 60269 30.38 86563 50 25582 61194 29.48 86776 51 25470 60175 29.74 85645 52 25893 62040 29.45 87933 53 24801 58973 29.60 83774 54 24425 57909 29.67 82334 55 24148 56634 29.89 80782 56 24307 56065 30.24 80372 57 23947 56630 29.72 80577 58 24314 56757 29.99 81071 59 24205 56054 30.16 80259 60 23425 55174 29.80 78599 61 23420 54731 29.97 78151 62 23075 55208 29.48 78283 63 22386 54235 29.22 76621 64 22478 53975 29.40 76453 65 22432 53281 29.63 75713 66 22885 53661 29.90 76546 67 22611 52221 30.22 74832 68 22204 52002 29.92 74206 69 21842 51489 29.79 73331 70 21484 51526 29.43 73010 71 20998 50265 29.47 71263 72 20669 49864 29.30 70533 73 20542 49207 29.45 69749 74 20078 48833 29.14 68911 75 19749 48644 28.88 68393 76 19659 47883 29.11 67542 77 20039 47262 29.78 67301 78 20074 48027 29.48 68101 79 19427 47048 29.22 66475 80 19131 46545 29.13 65676 81 18832 46505 28.82 65337 82 18357 45501 28.75 63858 83 18704 45665 29.06 64369 84 18670 45611 29.04 64281 85 18529 44938 29.19 63467 86 17979 44075 28.97 62054 87 17378 43764 28.42 61142 88 17495 43804 28.54 61299 89 17273 43060 28.63 60333 90 17101 42764 28.57 59865 91 16619 41964 28.37 58583 92 16608 41527 28.57 58135 93 16488 41866 28.26 58354 94 16323 41249 28.35 57572 95 16155 40715 28.41 56870 96 16186 41198 28.21 57384 97 15302 39065 28.15 54367 98 14847 36996 28.64 51843 99 11533 28939 28.50 40472 100 15355 37074 29.29 52429 101 14623 37094 28.28 51717 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 92059 140269 39.62 232328 2 52496 132768 28.34 185264 3 22492 128601 14.89 151093 4 12355 128423 8.78 140778 5 8038 116579 6.45 124617 6 8023 111700 6.70 119723 7 5368 138922 3.72 144290 8 2578 150868 1.68 153446 9 2116 142227 1.47 144343 10 2097 138911 1.49 141008 11 2306 141125 1.61 143431 12 2259 138828 1.60 141087 13 1910 134696 1.40 136606 14 1911 135277 1.39 137188 15 1736 138224 1.24 139960 16 1553 138258 1.11 139811 17 1638 136750 1.18 138388 18 1536 135932 1.12 137468 19 1468 135993 1.07 137461 20 1579 142527 1.10 144106 21 1545 143265 1.07 144810 22 1593 142903 1.10 144496 23 1654 144370 1.13 146024 24 1615 144715 1.10 146330 25 1599 140907 1.12 142506 26 2023 142216 1.40 144239 27 1615 143818 1.11 145433 28 1602 142989 1.11 144591 29 1870 144831 1.27 146701 30 1614 144871 1.10 146485 31 1660 142092 1.15 143752 32 1654 142603 1.15 144257 33 1714 143795 1.18 145509 34 1746 141671 1.22 143417 35 2005 141372 1.40 143377 36 1772 141743 1.23 143515 37 1640 137346 1.18 138986 38 2021 140638 1.42 142659 39 1769 139100 1.26 140869 40 1648 138536 1.18 140184 41 1682 138539 1.20 140221 42 1706 137739 1.22 139445 43 1741 136375 1.26 138116 44 1703 137602 1.22 139305 45 1737 136417 1.26 138154 46 1864 134238 1.37 136102 47 1913 134493 1.40 136406 48 1776 137213 1.28 138989 49 1786 133580 1.32 135366 50 1894 132567 1.41 134461 51 1700 134143 1.25 135843 52 1864 132950 1.38 134814 53 1773 130922 1.34 132695 54 1810 131488 1.36 133298 55 1805 128645 1.38 130450 56 1890 129696 1.44 131586 57 1830 128415 1.41 130245 58 1710 127453 1.32 129163 59 1760 126679 1.37 128439 60 1763 126557 1.37 128320 61 1886 124263 1.50 126149 62 1971 125105 1.55 127076 63 1857 123180 1.49 125037 64 1891 123257 1.51 125148 65 2145 122480 1.72 124625 66 1778 120070 1.46 121848 67 1755 116859 1.48 118614 68 1983 117416 1.66 119399 69 1722 117065 1.45 118787 70 1660 114410 1.43 116070 71 1675 113192 1.46 114867 72 1616 113141 1.41 114757 73 1640 111725 1.45 113365 74 1847 111416 1.63 113263 75 1568 111135 1.39 112703 76 1572 107578 1.44 109150 77 1829 107657 1.67 109486 78 1568 106076 1.46 107644 79 1545 104015 1.46 105560 80 1450 103218 1.39 104668 81 1514 102098 1.46 103612 82 1511 100392 1.48 101903 83 1586 101967 1.53 103553 84 1524 101788 1.48 103312 85 1541 99736 1.52 101277 86 1607 100056 1.58 101663 87 1516 99511 1.50 101027 88 1413 98034 1.42 99447 89 1548 96581 1.58 98129 90 1491 96559 1.52 98050 91 1500 95524 1.55 97024 92 1529 95238 1.58 96767 93 1581 93875 1.66 95456 94 1490 91983 1.59 93473 95 1575 91168 1.70 92743 96 1515 89775 1.66 91290 97 1437 83322 1.70 84759 98 1323 76234 1.71 77557 99 853 49255 1.70 50108 100 1019 49814 2.00 50833 101 2150 83175 2.52 85325 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 113562 190486 37.35 304048 2 60467 203404 22.92 263871 3 33582 234160 12.54 267742 4 30275 249814 10.81 280089 5 29455 295660 9.06 325115 6 24440 321814 7.06 346254 7 19097 404197 4.51 423294 8 14748 434137 3.29 448885 9 11026 401368 2.67 412394 10 10870 390707 2.71 401577 11 13370 390634 3.31 404004 12 10916 393965 2.70 404881 13 12441 401510 3.01 413951 14 13886 410848 3.27 424734 15 11636 420287 2.69 431923 16 11426 424471 2.62 435897 17 13538 428026 3.07 441564 18 11247 442656 2.48 453903 19 11085 450768 2.40 461853 20 13395 464601 2.80 477996 21 11179 465483 2.35 476662 22 12311 465348 2.58 477659 23 13695 465708 2.86 479403 24 11560 465778 2.42 477338 25 12510 467111 2.61 479621 26 14058 470882 2.90 484940 27 11677 471658 2.42 483335 28 11368 473065 2.35 484433 29 13946 470424 2.88 484370 30 11471 465221 2.41 476692 31 11922 458795 2.53 470717 32 13074 460335 2.76 473409 33 11486 458567 2.44 470053 34 13112 461212 2.76 474324 35 13585 455566 2.90 469151 36 11649 459712 2.47 471361 37 11206 455316 2.40 466522 38 13800 454627 2.95 468427 39 11101 449719 2.41 460820 40 11164 448271 2.43 459435 41 13357 448284 2.89 461641 42 11571 450427 2.50 461998 43 12453 444211 2.73 456664 44 13228 445273 2.89 458501 45 11616 440223 2.57 451839 46 11374 440481 2.52 451855 47 12737 436509 2.84 449246 48 10884 434142 2.45 445026 49 11174 426790 2.55 437964 50 12577 424752 2.88 437329 51 10615 419473 2.47 430088 52 11664 415758 2.73 427422 53 12868 411286 3.03 424154 54 10934 410593 2.59 421527 55 11297 406297 2.71 417594 56 13117 406115 3.13 419232 57 10470 408342 2.50 418812 58 10810 404878 2.60 415688 59 12763 405242 3.05 418005 60 10342 399208 2.53 409550 61 11393 396288 2.79 407681 62 12163 391512 3.01 403675 63 10347 386959 2.60 397306 64 11444 385290 2.88 396734 65 12154 380565 3.09 392719 66 10113 377023 2.61 387136 67 10201 375597 2.64 385798 68 11819 372285 3.08 384104 69 9675 370202 2.55 379877 70 9963 366577 2.65 376540 71 11228 364404 2.99 375632 72 9781 361963 2.63 371744 73 10923 356377 2.97 367300 74 11097 354794 3.03 365891 75 9471 350872 2.63 360343 76 9613 349521 2.68 359134 77 11252 346170 3.15 357422 78 9024 343139 2.56 352163 79 9324 340735 2.66 350059 80 10744 337864 3.08 348608 81 9349 332991 2.73 342340 82 10224 328691 3.02 338915 83 10927 328408 3.22 339335 84 9368 324917 2.80 334285 85 9151 320592 2.78 329743 86 10260 316133 3.14 326393 87 8806 314276 2.73 323082 88 8643 311337 2.70 319980 89 10071 307159 3.17 317230 90 8416 306355 2.67 314771 91 8959 301982 2.88 310941 92 9624 300152 3.11 309776 93 8357 297844 2.73 306201 94 8229 293867 2.72 302096 95 9622 289575 3.22 299197 96 7888 283912 2.70 291800 97 7621 276399 2.68 284020 98 8404 257205 3.16 265609 99 4899 177397 2.69 182296 100 5570 157554 3.41 163124 101 8421 261290 3.12 269711 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 54350 55079 49.67 109429 2 46088 44851 50.68 90939 3 49388 50364 49.51 99752 4 45481 55885 44.87 101366 5 20087 72359 21.73 92446 6 12209 39974 23.40 52183 7 10695 41228 20.60 51923 8 11065 37612 22.73 48677 9 9575 33246 22.36 42821 10 10760 36352 22.84 47112 11 11506 35448 24.50 46954 12 11123 34125 24.58 45248 13 11474 33226 25.67 44700 14 11796 34276 25.60 46072 15 11410 31337 26.69 42747 16 10802 29636 26.71 40438 17 12710 32544 28.09 45254 18 12631 32132 28.22 44763 19 11799 30927 27.62 42726 20 11043 29600 27.17 40643 21 11717 28833 28.90 40550 22 11399 29347 27.98 40746 23 10825 28439 27.57 39264 24 10193 26815 27.54 37008 25 11260 28997 27.97 40257 26 10472 27189 27.81 37661 27 11221 27340 29.10 38561 28 10294 25858 28.47 36152 29 10769 27340 28.26 38109 30 10295 25093 29.09 35388 31 9908 25601 27.90 35509 32 9657 24593 28.20 34250 33 10983 25174 30.38 36157 34 10259 26675 27.78 36934 35 12324 28531 30.17 40855 36 10552 24947 29.72 35499 37 10574 25502 29.31 36076 38 9243 24186 27.65 33429 39 9833 24100 28.98 33933 40 10465 24365 30.05 34830 41 9580 23692 28.79 33272 42 9659 24227 28.50 33886 43 9407 23709 28.41 33116 44 9045 23204 28.05 32249 45 11185 26207 29.91 37392 46 8599 21566 28.51 30165 47 8632 21734 28.43 30366 48 8912 21936 28.89 30848 49 8540 21942 28.02 30482 50 8179 20947 28.08 29126 51 8366 20575 28.91 28941 52 8129 20668 28.23 28797 53 8465 20512 29.21 28977 54 8208 20694 28.40 28902 55 8316 20311 29.05 28627 56 7697 19687 28.11 27384 57 8041 20242 28.43 28283 58 7820 19458 28.67 27278 59 7781 18571 29.53 26352 60 7714 19310 28.54 27024 61 6850 18368 27.16 25218 62 7085 17742 28.54 24827 63 7824 18084 30.20 25908 64 7168 17702 28.82 24870 65 6879 16937 28.88 23816 66 7493 17758 29.67 25251 67 6735 18291 26.91 25026 68 7546 18950 28.48 26496 69 6584 16324 28.74 22908 70 6570 16396 28.61 22966 71 6787 16242 29.47 23029 72 6282 15767 28.49 22049 73 6537 16047 28.95 22584 74 5814 15041 27.88 20855 75 5741 15315 27.27 21056 76 6085 14968 28.90 21053 77 5817 14911 28.06 20728 78 5876 14653 28.62 20529 79 5744 14617 28.21 20361 80 5682 14383 28.32 20065 81 5552 14263 28.02 19815 82 5610 14278 28.21 19888 83 5674 13785 29.16 19459 84 6215 15003 29.29 21218 85 5374 13674 28.21 19048 86 5347 13453 28.44 18800 87 5261 13210 28.48 18471 88 5193 13223 28.20 18416 89 5553 13909 28.53 19462 90 5490 13436 29.01 18926 91 5120 13052 28.18 18172 92 4949 12676 28.08 17625 93 5098 12662 28.70 17760 94 5095 12763 28.53 17858 95 5161 12453 29.30 17614 96 4949 12396 28.53 17345 97 5618 13404 29.53 19022 98 4796 11760 28.97 16556 99 4425 0 100.00 4425 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 14044 68550 17.00 82594 2 13949 68469 16.92 82418 3 12599 68705 15.50 81304 4 13907 75500 15.55 89407 5 1515 136793 1.10 138308 6 1197 169654 0.70 170851 7 767 93813 0.81 94580 8 791 98592 0.80 99383 9 733 81636 0.89 82369 10 678 78185 0.86 78863 11 1008 106632 0.94 107640 12 740 84293 0.87 85033 13 729 83275 0.87 84004 14 702 78322 0.89 79024 15 729 75197 0.96 75926 16 705 71293 0.98 71998 17 752 75406 0.99 76158 18 943 68013 1.37 68956 19 732 65201 1.11 65933 20 706 65452 1.07 66158 21 940 62382 1.48 63322 22 681 68486 0.98 69167 23 718 67482 1.05 68200 24 565 60575 0.92 61140 25 591 61311 0.95 61902 26 697 64814 1.06 65511 27 603 60185 0.99 60788 28 507 58399 0.86 58906 29 572 62324 0.91 62896 30 611 59949 1.01 60560 31 546 56767 0.95 57313 32 564 57892 0.96 58456 33 616 70213 0.87 70829 34 567 57043 0.98 57610 35 635 58723 1.07 59358 36 589 60196 0.97 60785 37 484 54024 0.89 54508 38 534 57256 0.92 57790 39 544 53249 1.01 53793 40 520 53239 0.97 53759 41 452 51173 0.88 51625 42 553 49123 1.11 49676 43 493 50656 0.96 51149 44 471 49649 0.94 50120 45 449 47117 0.94 47566 46 465 47205 0.98 47670 47 489 48622 1.00 49111 48 556 46542 1.18 47098 49 482 48991 0.97 49473 50 474 46657 1.01 47131 51 489 44128 1.10 44617 52 506 43383 1.15 43889 53 503 48483 1.03 48986 54 483 44745 1.07 45228 55 429 43690 0.97 44119 56 487 44422 1.08 44909 57 616 42688 1.42 43304 58 448 41716 1.06 42164 59 421 42382 0.98 42803 60 579 41967 1.36 42546 61 454 40923 1.10 41377 62 493 42426 1.15 42919 63 420 41825 0.99 42245 64 384 39716 0.96 40100 65 402 40161 0.99 40563 66 341 37774 0.89 38115 67 395 40850 0.96 41245 68 385 39025 0.98 39410 69 413 39116 1.04 39529 70 348 38638 0.89 38986 71 368 39401 0.93 39769 72 355 36863 0.95 37218 73 355 35743 0.98 36098 74 346 37124 0.92 37470 75 325 36249 0.89 36574 76 304 34400 0.88 34704 77 363 36560 0.98 36923 78 338 34179 0.98 34517 79 303 33865 0.89 34168 80 313 33208 0.93 33521 81 284 32469 0.87 32753 82 256 31822 0.80 32078 83 295 32516 0.90 32811 84 303 31706 0.95 32009 85 303 35163 0.85 35466 86 317 31217 1.01 31534 87 302 31396 0.95 31698 88 267 29983 0.88 30250 89 288 30815 0.93 31103 90 333 31289 1.05 31622 91 297 32432 0.91 32729 92 263 29912 0.87 30175 93 296 29143 1.01 29439 94 275 28606 0.95 28881 95 330 29487 1.11 29817 96 352 27636 1.26 27988 97 327 27446 1.18 27773 98 256 27785 0.91 28041 99 246 0 100.00 246 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 21528 88677 19.53 110205 2 18473 71445 20.54 89918 3 19244 73538 20.74 92782 4 18874 72310 20.70 91184 5 5198 149963 3.35 155161 6 5241 203410 2.51 208651 7 5268 279803 1.85 285071 8 5710 273775 2.04 279485 9 6447 256419 2.45 262866 10 5572 264111 2.07 269683 11 5777 259210 2.18 264987 12 5722 242332 2.31 248054 13 5511 250848 2.15 256359 14 5177 250707 2.02 255884 15 5209 258482 1.98 263691 16 4847 248034 1.92 252881 17 5119 246612 2.03 251731 18 5195 246216 2.07 251411 19 4608 227507 1.99 232115 20 4961 241905 2.01 246866 21 4960 228069 2.13 233029 22 4794 219610 2.14 224404 23 4759 216454 2.15 221213 24 4489 208358 2.11 212847 25 4821 207670 2.27 212491 26 4636 207111 2.19 211747 27 5018 224188 2.19 229206 28 4213 209869 1.97 214082 29 4369 205653 2.08 210022 30 4792 199501 2.35 204293 31 4262 196253 2.13 200515 32 4317 191229 2.21 195546 33 4459 188979 2.31 193438 34 4416 188157 2.29 192573 35 4604 194993 2.31 199597 36 4042 191752 2.06 195794 37 3963 190841 2.03 194804 38 4256 201653 2.07 205909 39 4402 183641 2.34 188043 40 4054 193625 2.05 197679 41 4068 180239 2.21 184307 42 4147 186534 2.17 190681 43 4071 175848 2.26 179919 44 3877 173773 2.18 177650 45 3925 174629 2.20 178554 46 3622 176484 2.01 180106 47 3703 171333 2.12 175036 48 3789 168225 2.20 172014 49 3610 172984 2.04 176594 50 3568 168927 2.07 172495 51 3671 165133 2.17 168804 52 3406 156678 2.13 160084 53 3287 157088 2.05 160375 54 3183 153252 2.03 156435 55 3218 160523 1.97 163741 56 3218 152973 2.06 156191 57 3210 160284 1.96 163494 58 2865 153744 1.83 156609 59 3152 147125 2.10 150277 60 3168 152052 2.04 155220 61 3190 144455 2.16 147645 62 3060 143442 2.09 146502 63 2967 145177 2.00 148144 64 2857 139579 2.01 142436 65 2808 142839 1.93 145647 66 2960 136635 2.12 139595 67 2626 137605 1.87 140231 68 2794 142464 1.92 145258 69 2994 138975 2.11 141969 70 2565 131381 1.91 133946 71 2644 130465 1.99 133109 72 2686 130327 2.02 133013 73 2673 128699 2.03 131372 74 2591 130002 1.95 132593 75 2467 128205 1.89 130672 76 2356 123232 1.88 125588 77 2601 122698 2.08 125299 78 2614 123940 2.07 126554 79 2426 125964 1.89 128390 80 2577 121060 2.08 123637 81 2570 120963 2.08 123533 82 2416 120005 1.97 122421 83 2349 118437 1.94 120786 84 2403 117641 2.00 120044 85 2273 116208 1.92 118481 86 2275 115407 1.93 117682 87 2396 114650 2.05 117046 88 2045 110389 1.82 112434 89 2312 109339 2.07 111651 90 2299 110069 2.05 112368 91 2173 109151 1.95 111324 92 2074 107446 1.89 109520 93 2054 106410 1.89 108464 94 1941 106314 1.79 108255 95 2022 103376 1.92 105398 96 1951 101845 1.88 103796 97 1868 101875 1.80 103743 98 1627 98249 1.63 99876 99 1208 0 100.00 1208