CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 63590 90114 41.37 153704 2 61711 98354 38.55 160065 3 59012 84137 41.22 143149 4 61467 65506 48.41 126973 5 59704 56132 51.54 115836 6 61315 47152 56.53 108467 7 69948 48698 58.96 118646 8 32315 52472 38.11 84787 9 28530 48172 37.20 76702 10 28676 47185 37.80 75861 11 29720 48510 37.99 78230 12 29118 49907 36.85 79025 13 28403 52496 35.11 80899 14 26963 52041 34.13 79004 15 26715 52784 33.60 79499 16 25162 52085 32.57 77247 17 23686 50448 31.95 74134 18 24537 51623 32.22 76160 19 23528 52607 30.90 76135 20 23838 52425 31.26 76263 21 24118 53463 31.09 77581 22 23566 52452 31.00 76018 23 23583 51863 31.26 75446 24 23069 52068 30.70 75137 25 22699 52100 30.35 74799 26 22989 51342 30.93 74331 27 23095 52928 30.38 76023 28 23476 52109 31.06 75585 29 23320 54236 30.07 77556 30 22456 53014 29.75 75470 31 23068 51768 30.82 74836 32 22259 50346 30.66 72605 33 22916 50872 31.06 73788 34 23712 50369 32.01 74081 35 22902 50263 31.30 73165 36 22743 51087 30.80 73830 37 21972 49958 30.55 71930 38 21735 50244 30.20 71979 39 22559 51535 30.45 74094 40 22276 49705 30.95 71981 41 22271 49952 30.84 72223 42 22643 50595 30.92 73238 43 22288 50111 30.78 72399 44 22183 49793 30.82 71976 45 22336 49483 31.10 71819 46 22663 50522 30.97 73185 47 22219 48628 31.36 70847 48 21979 48723 31.09 70702 49 22851 49279 31.68 72130 50 21960 49939 30.54 71899 51 22096 49704 30.77 71800 52 22390 52034 30.08 74424 53 21433 48812 30.51 70245 54 21095 48417 30.35 69512 55 20971 46853 30.92 67824 56 20949 46388 31.11 67337 57 20920 46781 30.90 67701 58 21310 47154 31.13 68464 59 21316 46367 31.49 67683 60 20560 46242 30.78 66802 61 20653 45706 31.12 66359 62 20308 46475 30.41 66783 63 20006 45958 30.33 65964 64 19648 45639 30.09 65287 65 19998 45068 30.73 65066 66 20103 45370 30.70 65473 67 19934 44249 31.06 64183 68 19675 43837 30.98 63512 69 19665 43241 31.26 62906 70 19402 43544 30.82 62946 71 18880 42903 30.56 61783 72 18781 42380 30.71 61161 73 18537 41780 30.73 60317 74 18593 41510 30.94 60103 75 17586 41668 29.68 59254 76 17996 40973 30.52 58969 77 18405 40579 31.20 58984 78 18145 40620 30.88 58765 79 17995 40148 30.95 58143 80 17469 39990 30.40 57459 81 17207 39598 30.29 56805 82 17033 39263 30.26 56296 83 17396 39704 30.47 57100 84 17113 39673 30.14 56786 85 17023 38765 30.51 55788 86 16539 38193 30.22 54732 87 16258 37347 30.33 53605 88 16509 37514 30.56 54023 89 16177 37229 30.29 53406 90 16048 37069 30.21 53117 91 15661 36627 29.95 52288 92 15768 36032 30.44 51800 93 15527 36361 29.92 51888 94 15724 35637 30.61 51361 95 15646 35575 30.55 51221 96 15345 36098 29.83 51443 97 15001 34665 30.20 49666 98 13932 32569 29.96 46501 99 11006 25429 30.21 36435 100 14761 32594 31.17 47355 101 13938 32570 29.97 46508 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 80031 110186 42.07 190217 2 46813 103302 31.18 150115 3 20597 101609 16.85 122206 4 11210 100919 10.00 112129 5 7358 92246 7.39 99604 6 8307 90042 8.45 98349 7 4706 110637 4.08 115343 8 2103 120132 1.72 122235 9 1745 115384 1.49 117129 10 1772 111388 1.57 113160 11 1882 113429 1.63 115311 12 1906 113425 1.65 115331 13 1601 109895 1.44 111496 14 1540 109865 1.38 111405 15 1571 112699 1.37 114270 16 1343 112056 1.18 113399 17 1365 111500 1.21 112865 18 1213 110795 1.08 112008 19 1212 111286 1.08 112498 20 1295 116013 1.10 117308 21 1286 117833 1.08 119119 22 1376 116382 1.17 117758 23 1357 117449 1.14 118806 24 1286 118256 1.08 119542 25 1339 114988 1.15 116327 26 1710 116334 1.45 118044 27 1258 116616 1.07 117874 28 1214 117122 1.03 118336 29 1443 118170 1.21 119613 30 1258 119811 1.04 121069 31 1298 116215 1.10 117513 32 1308 117515 1.10 118823 33 1329 118155 1.11 119484 34 1346 116790 1.14 118136 35 1642 116742 1.39 118384 36 1380 116604 1.17 117984 37 1255 113353 1.10 114608 38 1506 116121 1.28 117627 39 1290 114473 1.11 115763 40 1317 114683 1.14 116000 41 1205 115091 1.04 116296 42 1267 114216 1.10 115483 43 1306 113030 1.14 114336 44 1214 114910 1.05 116124 45 1357 114000 1.18 115357 46 1361 112559 1.19 113920 47 1387 112650 1.22 114037 48 1291 114595 1.11 115886 49 1397 111632 1.24 113029 50 1412 111568 1.25 112980 51 1319 112912 1.15 114231 52 1341 112533 1.18 113874 53 1363 110422 1.22 111785 54 1466 111936 1.29 113402 55 1412 109216 1.28 110628 56 1443 111035 1.28 112478 57 1438 109630 1.29 111068 58 1393 109011 1.26 110404 59 1460 109371 1.32 110831 60 1379 109258 1.25 110637 61 1432 108275 1.31 109707 62 1523 108965 1.38 110488 63 1480 107194 1.36 108674 64 1438 107694 1.32 109132 65 1794 106711 1.65 108505 66 1413 104931 1.33 106344 67 1483 101632 1.44 103115 68 1604 103418 1.53 105022 69 1422 102897 1.36 104319 70 1392 100389 1.37 101781 71 1368 100255 1.35 101623 72 1428 99042 1.42 100470 73 1396 98907 1.39 100303 74 1643 97385 1.66 99028 75 1319 97924 1.33 99243 76 1274 95648 1.31 96922 77 1590 95396 1.64 96986 78 1325 94684 1.38 96009 79 1352 93062 1.43 94414 80 1260 91942 1.35 93202 81 1253 90894 1.36 92147 82 1245 90031 1.36 91276 83 1319 91750 1.42 93069 84 1264 90860 1.37 92124 85 1305 89713 1.43 91018 86 1366 90628 1.48 91994 87 1237 91117 1.34 92354 88 1301 87951 1.46 89252 89 1340 86910 1.52 88250 90 1293 86858 1.47 88151 91 1253 85578 1.44 86831 92 1360 86544 1.55 87904 93 1500 85147 1.73 86647 94 1379 83569 1.62 84948 95 1322 82187 1.58 83509 96 1390 81720 1.67 83110 97 1297 75234 1.69 76531 98 1206 69267 1.71 70473 99 766 44398 1.70 45164 100 883 44589 1.94 45472 101 1947 75832 2.50 77779 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 88022 151217 36.79 239239 2 48351 159570 23.25 207921 3 27963 192162 12.70 220125 4 25591 202076 11.24 227667 5 25397 236254 9.71 261651 6 20233 255222 7.35 275455 7 16395 323557 4.82 339952 8 12579 348626 3.48 361205 9 8909 322963 2.68 331872 10 8862 316880 2.72 325742 11 11201 315777 3.43 326978 12 8722 319109 2.66 327831 13 10249 326271 3.05 336520 14 11545 334133 3.34 345678 15 9398 342670 2.67 352068 16 9336 346506 2.62 355842 17 11673 347324 3.25 358997 18 9132 359835 2.48 368967 19 8885 364405 2.38 373290 20 11019 378004 2.83 389023 21 8902 378204 2.30 387106 22 9871 377976 2.55 387847 23 11405 379677 2.92 391082 24 9358 378697 2.41 388055 25 10052 380827 2.57 390879 26 11531 383728 2.92 395259 27 9329 385195 2.36 394524 28 9091 386167 2.30 395258 29 11532 384090 2.91 395622 30 9396 379474 2.42 388870 31 9774 374488 2.54 384262 32 10996 377946 2.83 388942 33 9210 376226 2.39 385436 34 10542 378724 2.71 389266 35 11400 373561 2.96 384961 36 9389 378235 2.42 387624 37 9162 373872 2.39 383034 38 11210 375441 2.90 386651 39 9019 373132 2.36 382151 40 9492 372050 2.49 381542 41 11111 373984 2.89 385095 42 9477 376192 2.46 385669 43 10315 370571 2.71 380886 44 11068 373279 2.88 384347 45 9539 368118 2.53 377657 46 9501 368083 2.52 377584 47 10928 365583 2.90 376511 48 9077 365793 2.42 374870 49 9495 359960 2.57 369455 50 10519 358742 2.85 369261 51 8781 354627 2.42 363408 52 9765 352539 2.70 362304 53 10919 350033 3.03 360952 54 9284 349262 2.59 358546 55 9479 349051 2.64 358530 56 10984 349160 3.05 360144 57 8760 352992 2.42 361752 58 9252 348903 2.58 358155 59 11069 350910 3.06 361979 60 8617 345284 2.43 353901 61 9590 343668 2.71 353258 62 10386 338658 2.98 349044 63 8703 336059 2.52 344762 64 9765 335286 2.83 345051 65 10273 332271 3.00 342544 66 8382 330072 2.48 338454 67 8734 327591 2.60 336325 68 10224 325876 3.04 336100 69 8221 323637 2.48 331858 70 8759 322397 2.64 331156 71 10048 320019 3.04 330067 72 8294 318780 2.54 327074 73 9597 313641 2.97 323238 74 9763 313663 3.02 323426 75 8322 310406 2.61 318728 76 8314 309344 2.62 317658 77 10190 306868 3.21 317058 78 7662 303406 2.46 311068 79 8311 302554 2.67 310865 80 9603 300082 3.10 309685 81 8107 295683 2.67 303790 82 8918 292769 2.96 301687 83 9934 293773 3.27 303707 84 8187 288955 2.76 297142 85 8080 285811 2.75 293891 86 9112 282426 3.13 291538 87 8019 282466 2.76 290485 88 7680 280185 2.67 287865 89 9219 277439 3.22 286658 90 7641 275098 2.70 282739 91 7953 271654 2.84 279607 92 8674 271819 3.09 280493 93 7515 267230 2.74 274745 94 7441 264976 2.73 272417 95 8799 260643 3.27 269442 96 7138 254616 2.73 261754 97 6826 248741 2.67 255567 98 7622 231627 3.19 239249 99 4334 160000 2.64 164334 100 5240 141329 3.58 146569 101 7686 235577 3.16 243263 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 52881 47804 52.52 100685 2 44764 38705 53.63 83469 3 47144 43927 51.77 91071 4 41989 48013 46.65 90002 5 18735 61294 23.41 80029 6 11667 34411 25.32 46078 7 10086 36438 21.68 46524 8 10671 32836 24.53 43507 9 9388 28760 24.61 38148 10 10074 31778 24.07 41852 11 10917 30826 26.15 41743 12 10492 29930 25.96 40422 13 10765 28586 27.36 39351 14 11167 29506 27.46 40673 15 10760 27007 28.49 37767 16 10211 26214 28.03 36425 17 12305 28770 29.96 41075 18 11993 27453 30.40 39446 19 11406 26849 29.82 38255 20 10450 25902 28.75 36352 21 10980 24791 30.70 35771 22 10973 26100 29.60 37073 23 10457 24836 29.63 35293 24 9682 23471 29.20 33153 25 10924 24968 30.44 35892 26 9921 23604 29.59 33525 27 10495 23537 30.84 34032 28 9951 22768 30.41 32719 29 10114 23455 30.13 33569 30 9672 22198 30.35 31870 31 9382 22204 29.70 31586 32 9239 21474 30.08 30713 33 10491 21820 32.47 32311 34 9937 22925 30.24 32862 35 12067 24645 32.87 36712 36 10033 21559 31.76 31592 37 10141 22058 31.49 32199 38 8873 20857 29.85 29730 39 9609 21165 31.22 30774 40 10381 20902 33.18 31283 41 8968 20560 30.37 29528 42 9182 20986 30.44 30168 43 8981 20565 30.40 29546 44 8536 20219 29.69 28755 45 11146 22795 32.84 33941 46 8112 18515 30.47 26627 47 8317 18686 30.80 27003 48 8328 18716 30.79 27044 49 8122 19144 29.79 27266 50 7723 18166 29.83 25889 51 7769 17647 30.57 25416 52 7538 17834 29.71 25372 53 7866 17378 31.16 25244 54 7818 17536 30.84 25354 55 8046 17608 31.36 25654 56 7392 17250 30.00 24642 57 7824 17233 31.22 25057 58 7486 16693 30.96 24179 59 7299 16099 31.19 23398 60 7213 16431 30.51 23644 61 6637 15687 29.73 22324 62 6723 15476 30.29 22199 63 7152 15481 31.60 22633 64 6748 15348 30.54 22096 65 6634 14558 31.30 21192 66 7024 15084 31.77 22108 67 6525 15249 29.97 21774 68 7348 16193 31.21 23541 69 6577 14148 31.73 20725 70 6344 13988 31.20 20332 71 6515 13878 31.95 20393 72 5848 13663 29.97 19511 73 5975 13579 30.56 19554 74 5628 13160 29.96 18788 75 5514 13175 29.50 18689 76 5714 12737 30.97 18451 77 5641 12780 30.62 18421 78 5373 12611 29.88 17984 79 5322 12437 29.97 17759 80 5152 12412 29.33 17564 81 5372 12294 30.41 17666 82 5352 12242 30.42 17594 83 5431 12104 30.97 17535 84 6013 13021 31.59 19034 85 4984 11860 29.59 16844 86 4930 11652 29.73 16582 87 4914 11227 30.44 16141 88 4911 11178 30.52 16089 89 5274 11570 31.31 16844 90 5145 11379 31.14 16524 91 4900 11083 30.66 15983 92 4586 10673 30.05 15259 93 4646 10551 30.57 15197 94 4760 10820 30.55 15580 95 4799 10652 31.06 15451 96 4733 10601 30.87 15334 97 5220 11224 31.74 16444 98 4473 9808 31.32 14281 99 4024 0 100.00 4024 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 12761 62044 17.06 74805 2 12300 60372 16.93 72672 3 11684 60854 16.11 72538 4 12539 67549 15.66 80088 5 1420 121245 1.16 122665 6 1108 150820 0.73 151928 7 680 83463 0.81 84143 8 768 89659 0.85 90427 9 682 73419 0.92 74101 10 656 70809 0.92 71465 11 944 98082 0.95 99026 12 689 75834 0.90 76523 13 730 75263 0.96 75993 14 674 70947 0.94 71621 15 703 68788 1.01 69491 16 595 64267 0.92 64862 17 641 69278 0.92 69919 18 824 60669 1.34 61493 19 651 59320 1.09 59971 20 595 58709 1.00 59304 21 889 56434 1.55 57323 22 603 62039 0.96 62642 23 653 61901 1.04 62554 24 532 55029 0.96 55561 25 565 55759 1.00 56324 26 628 58679 1.06 59307 27 559 54988 1.01 55547 28 530 52898 0.99 53428 29 565 56531 0.99 57096 30 565 54602 1.02 55167 31 482 51882 0.92 52364 32 461 52618 0.87 53079 33 568 64071 0.88 64639 34 456 51497 0.88 51953 35 492 53818 0.91 54310 36 522 54676 0.95 55198 37 469 49355 0.94 49824 38 497 52507 0.94 53004 39 506 47333 1.06 47839 40 480 48511 0.98 48991 41 478 46920 1.01 47398 42 453 44543 1.01 44996 43 407 45369 0.89 45776 44 452 44775 1.00 45227 45 392 42555 0.91 42947 46 412 42672 0.96 43084 47 442 43574 1.00 44016 48 472 42123 1.11 42595 49 438 43320 1.00 43758 50 443 42287 1.04 42730 51 468 39902 1.16 40370 52 438 39413 1.10 39851 53 439 43818 0.99 44257 54 421 40391 1.03 40812 55 375 39267 0.95 39642 56 396 39913 0.98 40309 57 539 38057 1.40 38596 58 359 37226 0.96 37585 59 377 38478 0.97 38855 60 475 37504 1.25 37979 61 406 37264 1.08 37670 62 437 38757 1.11 39194 63 389 37543 1.03 37932 64 332 34922 0.94 35254 65 378 36602 1.02 36980 66 343 34196 0.99 34539 67 388 37263 1.03 37651 68 369 35072 1.04 35441 69 318 35074 0.90 35392 70 343 34799 0.98 35142 71 348 35389 0.97 35737 72 296 33082 0.89 33378 73 307 32377 0.94 32684 74 319 33646 0.94 33965 75 291 32312 0.89 32603 76 290 30797 0.93 31087 77 312 32623 0.95 32935 78 272 30655 0.88 30927 79 295 30464 0.96 30759 80 274 29644 0.92 29918 81 256 29344 0.86 29600 82 295 28754 1.02 29049 83 298 29178 1.01 29476 84 270 28191 0.95 28461 85 266 31355 0.84 31621 86 265 27986 0.94 28251 87 277 28078 0.98 28355 88 246 26756 0.91 27002 89 289 27649 1.03 27938 90 317 27455 1.14 27772 91 305 28771 1.05 29076 92 267 26960 0.98 27227 93 254 25877 0.97 26131 94 268 25590 1.04 25858 95 279 25990 1.06 26269 96 280 24877 1.11 25157 97 250 24714 1.00 24964 98 193 24556 0.78 24749 99 200 0 100.00 200 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 18788 77753 19.46 96541 2 16078 62469 20.47 78547 3 16797 65044 20.52 81841 4 16582 63969 20.59 80551 5 4790 134927 3.43 139717 6 4664 181660 2.50 186324 7 4954 250650 1.94 255604 8 5225 245018 2.09 250243 9 5538 230164 2.35 235702 10 5196 236531 2.15 241727 11 5225 233729 2.19 238954 12 5160 218451 2.31 223611 13 5128 225668 2.22 230796 14 4915 225377 2.13 230292 15 4732 232700 1.99 237432 16 4517 225161 1.97 229678 17 4727 222344 2.08 227071 18 4612 221706 2.04 226318 19 4346 204355 2.08 208701 20 4467 218673 2.00 223140 21 4390 206733 2.08 211123 22 4632 198314 2.28 202946 23 4315 194766 2.17 199081 24 4177 188008 2.17 192185 25 4287 186715 2.24 191002 26 4098 187456 2.14 191554 27 4477 202989 2.16 207466 28 4031 189436 2.08 193467 29 4039 184835 2.14 188874 30 4295 179818 2.33 184113 31 3954 176924 2.19 180878 32 3955 172227 2.24 176182 33 3890 170992 2.22 174882 34 4070 169500 2.34 173570 35 4292 175819 2.38 180111 36 3833 173127 2.17 176960 37 3624 171564 2.07 175188 38 3940 183587 2.10 187527 39 3780 164943 2.24 168723 40 3704 174606 2.08 178310 41 3749 162656 2.25 166405 42 3740 167803 2.18 171543 43 3810 158242 2.35 162052 44 3542 155752 2.22 159294 45 3626 157631 2.25 161257 46 3259 159895 2.00 163154 47 3353 154713 2.12 158066 48 3335 151529 2.15 154864 49 3208 157249 2.00 160457 50 3371 152115 2.17 155486 51 3289 147265 2.18 150554 52 3073 140654 2.14 143727 53 2981 141167 2.07 144148 54 2830 138250 2.01 141080 55 3011 144829 2.04 147840 56 2963 137468 2.11 140431 57 2807 143424 1.92 146231 58 2805 137158 2.00 139963 59 2883 131290 2.15 134173 60 2930 136575 2.10 139505 61 2936 129546 2.22 132482 62 2841 128438 2.16 131279 63 2717 129858 2.05 132575 64 2710 124713 2.13 127423 65 2601 126967 2.01 129568 66 2603 121853 2.09 124456 67 2518 122772 2.01 125290 68 2680 127339 2.06 130019 69 2616 122966 2.08 125582 70 2429 117802 2.02 120231 71 2438 117092 2.04 119530 72 2441 116422 2.05 118863 73 2388 115204 2.03 117592 74 2329 116289 1.96 118618 75 2302 114771 1.97 117073 76 2166 110055 1.93 112221 77 2354 109201 2.11 111555 78 2301 110310 2.04 112611 79 2230 112867 1.94 115097 80 2297 107764 2.09 110061 81 2470 107504 2.25 109974 82 2263 106516 2.08 108779 83 2227 105071 2.08 107298 84 2277 104473 2.13 106750 85 2142 103058 2.04 105200 86 2128 102912 2.03 105040 87 2139 101935 2.06 104074 88 1998 98067 2.00 100065 89 2070 98130 2.07 100200 90 2108 98108 2.10 100216 91 2099 97040 2.12 99139 92 1919 95837 1.96 97756 93 1872 95072 1.93 96944 94 1959 93924 2.04 95883 95 1782 91844 1.90 93626 96 1795 89993 1.96 91788 97 1718 90720 1.86 92438 98 1529 86852 1.73 88381 99 1095 0 100.00 1095