/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-221_S33_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-221_S33_L004_R2_001_val_2.fq.gz
Data processed at 05:39 on 2019-12-21
Alignment Stats
Sequence pairs analysed in total
16300374
Paired-end alignments with a unique best hit
6871477
Pairs without alignments under any condition
7612342
Pairs that did not map uniquely
1816555
Genomic sequence context not extractable (edges of chromosomes)
2
Cytosine Methylation
Total C's analysed
195629573
Methylated C's in CpG context
8208009
Methylated C's in CHG context
1115053
Methylated C's in CHH context
3356022
Methylated C's in Unknown context
59602
Unmethylated C's in CpG context
19626346
Unmethylated C's in CHG context
41123332
Unmethylated C's in CHH context
122200811
Unmethylated C's in Unknown context
418497
Percentage methylation (CpG context)
29.5%
Percentage methylation (CHG context)
2.6%
Percentage methylation (CHH context)
2.7%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3394540
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
3476935
original bottom strand
Deduplication
Alignments analysed
6871475
Unique alignments
4911622
Duplicates removed
1959853
Duplicated alignments were found at 1245701 different positions