/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-220_S32_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-220_S32_L004_R2_001_val_2.fq.gz
Data processed at 05:39 on 2019-12-21
Alignment Stats
Sequence pairs analysed in total
15670592
Paired-end alignments with a unique best hit
6443741
Pairs without alignments under any condition
7744109
Pairs that did not map uniquely
1482742
Genomic sequence context not extractable (edges of chromosomes)
1
Cytosine Methylation
Total C's analysed
192776371
Methylated C's in CpG context
7792143
Methylated C's in CHG context
1027385
Methylated C's in CHH context
3406922
Methylated C's in Unknown context
57729
Unmethylated C's in CpG context
19534468
Unmethylated C's in CHG context
40565305
Unmethylated C's in CHH context
120450148
Unmethylated C's in Unknown context
422486
Percentage methylation (CpG context)
28.5%
Percentage methylation (CHG context)
2.5%
Percentage methylation (CHH context)
2.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3171588
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
3272152
original bottom strand
Deduplication
Alignments analysed
6443740
Unique alignments
4362357
Duplicates removed
2081383
Duplicated alignments were found at 1265421 different positions