CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 145800 224830 39.34 370630 2 140215 251819 35.77 392034 3 131648 225771 36.83 357419 4 136824 184259 42.61 321083 5 134042 162264 45.24 296306 6 139780 132957 51.25 272737 7 155670 128206 54.84 283876 8 72119 150479 32.40 222598 9 64163 137984 31.74 202147 10 64015 133245 32.45 197260 11 66408 136253 32.77 202661 12 64730 137692 31.98 202422 13 63746 139783 31.32 203529 14 61988 141769 30.42 203757 15 60704 142744 29.84 203448 16 56935 142185 28.59 199120 17 53612 138503 27.91 192115 18 55048 141198 28.05 196246 19 54520 142328 27.70 196848 20 54881 144080 27.58 198961 21 55323 145737 27.52 201060 22 54451 142912 27.59 197363 23 53950 142112 27.52 196062 24 53078 142894 27.08 195972 25 52325 141592 26.98 193917 26 52477 139522 27.33 191999 27 52897 144667 26.77 197564 28 54295 143114 27.50 197409 29 52788 143067 26.95 195855 30 52302 141942 26.93 194244 31 53104 139996 27.50 193100 32 51662 137068 27.37 188730 33 52409 138869 27.40 191278 34 53179 137694 27.86 190873 35 52188 138191 27.41 190379 36 51325 139227 26.93 190552 37 50042 135762 26.93 185804 38 49361 134943 26.78 184304 39 51310 138073 27.09 189383 40 50572 134801 27.28 185373 41 50115 135276 27.03 185391 42 51606 138294 27.18 189900 43 50697 136101 27.14 186798 44 50051 134943 27.06 184994 45 50618 134135 27.40 184753 46 50530 135192 27.21 185722 47 49635 132366 27.27 182001 48 49389 131995 27.23 181384 49 50811 132100 27.78 182911 50 49186 133370 26.94 182556 51 50210 133145 27.38 183355 52 49768 135090 26.92 184858 53 47800 129399 26.98 177199 54 47440 127291 27.15 174731 55 46943 125724 27.19 172667 56 46962 123871 27.49 170833 57 47390 125731 27.37 173121 58 47096 125343 27.31 172439 59 46674 123961 27.35 170635 60 45995 123635 27.11 169630 61 46012 121782 27.42 167794 62 44840 122235 26.84 167075 63 44123 120592 26.79 164715 64 44035 120064 26.83 164099 65 43904 119227 26.91 163131 66 45022 119827 27.31 164849 67 43836 116330 27.37 160166 68 42981 117221 26.83 160202 69 42651 115969 26.89 158620 70 42278 115947 26.72 158225 71 40963 112835 26.63 153798 72 41121 112586 26.75 153707 73 40410 110454 26.79 150864 74 40356 109356 26.96 149712 75 39067 108957 26.39 148024 76 39418 107594 26.81 147012 77 39294 106419 26.97 145713 78 39429 108685 26.62 148114 79 39189 105387 27.11 144576 80 38013 105140 26.55 143153 81 37563 104297 26.48 141860 82 36440 102535 26.22 138975 83 37512 103532 26.60 141044 84 37135 102998 26.50 140133 85 36697 100921 26.67 137618 86 35769 100024 26.34 135793 87 34553 98261 26.02 132814 88 35185 98479 26.32 133664 89 34522 96851 26.28 131373 90 34143 96838 26.07 130981 91 33628 94835 26.18 128463 92 33336 94582 26.06 127918 93 32958 93967 25.97 126925 94 32812 92252 26.24 125064 95 32530 91319 26.27 123849 96 32394 92048 26.03 124442 97 31023 88785 25.89 119808 98 29205 83264 25.97 112469 99 23365 65109 26.41 88474 100 30629 83433 26.85 114062 101 29278 83418 25.98 112696 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 189924 287725 39.76 477649 2 107079 279178 27.72 386257 3 41463 270614 13.29 312077 4 22363 265174 7.78 287537 5 15024 241033 5.87 256057 6 12995 224254 5.48 237249 7 10167 289262 3.40 299429 8 4463 317667 1.39 322130 9 3844 301942 1.26 305786 10 3784 288253 1.30 292037 11 3761 289469 1.28 293230 12 3742 285990 1.29 289732 13 3383 277098 1.21 280481 14 3298 277458 1.17 280756 15 3310 284551 1.15 287861 16 2933 284047 1.02 286980 17 2815 281603 0.99 284418 18 2691 279490 0.95 282181 19 2583 280599 0.91 283182 20 2783 294342 0.94 297125 21 2725 296824 0.91 299549 22 2792 293019 0.94 295811 23 2827 297990 0.94 300817 24 2823 299227 0.93 302050 25 2764 290572 0.94 293336 26 3053 292058 1.03 295111 27 2726 296228 0.91 298954 28 2778 294874 0.93 297652 29 2980 298233 0.99 301213 30 2854 299277 0.94 302131 31 2827 293381 0.95 296208 32 2831 297100 0.94 299931 33 2880 295912 0.96 298792 34 2930 292787 0.99 295717 35 3107 292407 1.05 295514 36 3012 292873 1.02 295885 37 3034 285463 1.05 288497 38 3193 291178 1.08 294371 39 2943 287485 1.01 290428 40 3056 287735 1.05 290791 41 3036 287597 1.04 290633 42 3002 286188 1.04 289190 43 2973 282943 1.04 285916 44 3047 286133 1.05 289180 45 3113 284393 1.08 287506 46 3049 279872 1.08 282921 47 3148 281379 1.11 284527 48 3133 286618 1.08 289751 49 3043 279167 1.08 282210 50 3253 278886 1.15 282139 51 3247 279688 1.15 282935 52 3190 277069 1.14 280259 53 3201 275167 1.15 278368 54 3289 276157 1.18 279446 55 3201 272032 1.16 275233 56 3257 273925 1.18 277182 57 3142 271985 1.14 275127 58 3251 268881 1.19 272132 59 3337 269500 1.22 272837 60 3303 269006 1.21 272309 61 3189 264823 1.19 268012 62 3396 264481 1.27 267877 63 3281 261847 1.24 265128 64 3317 260026 1.26 263343 65 3481 260549 1.32 264030 66 3329 254590 1.29 257919 67 3255 249055 1.29 252310 68 3463 250693 1.36 254156 69 3309 250086 1.31 253395 70 3080 243785 1.25 246865 71 3083 245000 1.24 248083 72 3143 242081 1.28 245224 73 3094 239508 1.28 242602 74 3166 238215 1.31 241381 75 3076 238112 1.28 241188 76 2905 230308 1.25 233213 77 3243 232018 1.38 235261 78 3107 228059 1.34 231166 79 2950 222959 1.31 225909 80 2913 222636 1.29 225549 81 3009 219570 1.35 222579 82 2869 216760 1.31 219629 83 3004 219777 1.35 222781 84 3047 218102 1.38 221149 85 3001 215228 1.38 218229 86 2967 214646 1.36 217613 87 2950 216294 1.35 219244 88 2902 211470 1.35 214372 89 3012 208539 1.42 211551 90 2939 208612 1.39 211551 91 2871 205618 1.38 208489 92 2919 205957 1.40 208876 93 3161 202855 1.53 206016 94 2928 199044 1.45 201972 95 2976 197002 1.49 199978 96 3004 195516 1.51 198520 97 2847 178517 1.57 181364 98 2558 164851 1.53 167409 99 1685 107305 1.55 108990 100 1963 107556 1.79 109519 101 4165 180134 2.26 184299 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 203773 351566 36.69 555339 2 97711 382423 20.35 480134 3 50336 452811 10.00 503147 4 44140 482772 8.38 526912 5 42434 587095 6.74 629529 6 34661 648215 5.08 682876 7 30611 835755 3.53 866366 8 18802 915890 2.01 934692 9 13759 835061 1.62 848820 10 13333 806725 1.63 820058 11 15596 803842 1.90 819438 12 13188 811723 1.60 824911 13 14463 825959 1.72 840422 14 15750 844167 1.83 859917 15 13790 865290 1.57 879080 16 13244 872497 1.50 885741 17 15425 880465 1.72 895890 18 13204 910883 1.43 924087 19 13270 933351 1.40 946621 20 15264 958132 1.57 973396 21 13285 962077 1.36 975362 22 14126 961285 1.45 975411 23 15682 961334 1.61 977016 24 13582 961913 1.39 975495 25 14210 964679 1.45 978889 26 15897 972740 1.61 988637 27 13400 978159 1.35 991559 28 13676 979281 1.38 992957 29 15626 975407 1.58 991033 30 13695 966354 1.40 980049 31 13907 953181 1.44 967088 32 15248 952527 1.58 967775 33 13430 952778 1.39 966208 34 14561 955942 1.50 970503 35 15401 946031 1.60 961432 36 13635 955314 1.41 968949 37 13122 946883 1.37 960005 38 15276 945887 1.59 961163 39 13432 938254 1.41 951686 40 13572 932569 1.43 946141 41 15340 937453 1.61 952793 42 13747 938103 1.44 951850 43 14072 928484 1.49 942556 44 15081 932490 1.59 947571 45 13709 920785 1.47 934494 46 13671 921925 1.46 935596 47 14845 917323 1.59 932168 48 13310 911498 1.44 924808 49 13508 900948 1.48 914456 50 14678 896459 1.61 911137 51 12858 888139 1.43 900997 52 13626 881042 1.52 894668 53 14777 872576 1.67 887353 54 13090 870622 1.48 883712 55 13273 865412 1.51 878685 56 14692 862650 1.67 877342 57 12912 870396 1.46 883308 58 13362 863758 1.52 877120 59 15169 864550 1.72 879719 60 12496 852793 1.44 865289 61 13165 846922 1.53 860087 62 14298 834719 1.68 849017 63 12718 831144 1.51 843862 64 13514 823817 1.61 837331 65 14357 818348 1.72 832705 66 12307 814155 1.49 826462 67 12652 808415 1.54 821067 68 14124 803099 1.73 817223 69 12051 797394 1.49 809445 70 12071 791315 1.50 803386 71 13664 784952 1.71 798616 72 11959 782156 1.51 794115 73 12786 766971 1.64 779757 74 13269 767918 1.70 781187 75 11599 760916 1.50 772515 76 11736 756406 1.53 768142 77 13413 750191 1.76 763604 78 11229 743515 1.49 754744 79 11571 738683 1.54 750254 80 12731 732079 1.71 744810 81 11542 722238 1.57 733780 82 11829 714864 1.63 726693 83 12880 713886 1.77 726766 84 11398 703719 1.59 715117 85 11174 695253 1.58 706427 86 12316 686779 1.76 699095 87 10941 682654 1.58 693595 88 10852 678616 1.57 689468 89 12194 668678 1.79 680872 90 10646 666072 1.57 676718 91 10817 659217 1.61 670034 92 11745 653881 1.76 665626 93 10432 647829 1.58 658261 94 10483 637992 1.62 648475 95 11493 630632 1.79 642125 96 10182 619453 1.62 629635 97 9865 603430 1.61 613295 98 10310 561701 1.80 572011 99 6241 385741 1.59 391982 100 6828 341530 1.96 348358 101 11066 570394 1.90 581460 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 100341 114184 46.77 214525 2 87471 99064 46.89 186535 3 95877 112780 45.95 208657 4 89146 128345 40.99 217491 5 39394 166035 19.18 205429 6 23568 90146 20.73 113714 7 20880 93595 18.24 114475 8 21527 86237 19.98 107764 9 19165 75918 20.16 95083 10 21354 83504 20.36 104858 11 22730 81469 21.81 104199 12 21863 77198 22.07 99061 13 22536 75860 22.90 98396 14 23817 77292 23.56 101109 15 23021 71724 24.30 94745 16 21962 68544 24.27 90506 17 25469 74684 25.43 100153 18 24986 73604 25.34 98590 19 23901 70399 25.35 94300 20 22208 68174 24.57 90382 21 23364 66124 26.11 89488 22 22906 66769 25.54 89675 23 22186 64995 25.45 87181 24 20669 61900 25.03 82569 25 22656 65341 25.75 87997 26 20659 61462 25.16 82121 27 22161 62580 26.15 84741 28 20913 60025 25.84 80938 29 21304 61728 25.66 83032 30 20750 57992 26.35 78742 31 19620 58832 25.01 78452 32 18961 54813 25.70 73774 33 21706 56196 27.86 77902 34 20482 59318 25.67 79800 35 23826 62152 27.71 85978 36 20444 55565 26.90 76009 37 20753 56575 26.84 77328 38 18645 54097 25.63 72742 39 19445 54067 26.45 73512 40 21151 53859 28.20 75010 41 18643 52917 26.05 71560 42 18971 53425 26.20 72396 43 18477 52200 26.14 70677 44 17769 51242 25.75 69011 45 21236 55630 27.63 76866 46 17226 48362 26.26 65588 47 17609 48491 26.64 66100 48 17191 48799 26.05 65990 49 16981 48546 25.91 65527 50 16385 46237 26.16 62622 51 16252 45208 26.44 61460 52 16403 45632 26.44 62035 53 16384 44493 26.91 60877 54 16193 45005 26.46 61198 55 16312 44918 26.64 61230 56 15048 43728 25.60 58776 57 15767 44147 26.32 59914 58 15179 43206 26.00 58385 59 14925 41212 26.59 56137 60 15367 41638 26.96 57005 61 13465 39419 25.46 52884 62 13860 39822 25.82 53682 63 14677 39703 26.99 54380 64 13733 38768 26.16 52501 65 13576 37138 26.77 50714 66 14327 38225 27.26 52552 67 13390 38797 25.66 52187 68 14116 39612 26.27 53728 69 13175 35879 26.86 49054 70 12696 35776 26.19 48472 71 13031 34959 27.15 47990 72 12253 33897 26.55 46150 73 12376 34806 26.23 47182 74 11313 33049 25.50 44362 75 11257 32609 25.66 43866 76 11740 32262 26.68 44002 77 11526 31901 26.54 43427 78 11437 32112 26.26 43549 79 10868 31952 25.38 42820 80 10738 31193 25.61 41931 81 10708 30489 25.99 41197 82 10916 30775 26.18 41691 83 10937 29565 27.00 40502 84 11610 31961 26.65 43571 85 10466 29601 26.12 40067 86 10099 29439 25.54 39538 87 10154 28218 26.46 38372 88 10138 28383 26.32 38521 89 10498 28856 26.68 39354 90 10453 28215 27.03 38668 91 9866 27448 26.44 37314 92 9432 26775 26.05 36207 93 9935 27079 26.84 37014 94 9753 27215 26.38 36968 95 9716 26605 26.75 36321 96 9578 26663 26.43 36241 97 10007 27686 26.55 37693 98 9332 24785 27.35 34117 99 8055 0 100.00 8055 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 29581 148231 16.64 177812 2 30949 152777 16.85 183726 3 28525 154344 15.60 182869 4 31258 162362 16.14 193620 5 3057 301463 1.00 304520 6 2353 368876 0.63 371229 7 1348 201881 0.66 203229 8 1443 211582 0.68 213025 9 1253 179109 0.69 180362 10 1286 171393 0.74 172679 11 1770 223058 0.79 224828 12 1395 180819 0.77 182214 13 1375 177733 0.77 179108 14 1382 172094 0.80 173476 15 1363 163501 0.83 164864 16 1247 153304 0.81 154551 17 1370 163122 0.83 164492 18 1368 146499 0.93 147867 19 1221 143827 0.84 145048 20 1210 140926 0.85 142136 21 1362 137190 0.98 138552 22 1247 145268 0.85 146515 23 1221 145285 0.83 146506 24 1092 131788 0.82 132880 25 1167 133842 0.86 135009 26 1205 138803 0.86 140008 27 1062 131066 0.80 132128 28 1042 124815 0.83 125857 29 1124 131965 0.84 133089 30 1100 129001 0.85 130101 31 979 123192 0.79 124171 32 1029 125244 0.81 126273 33 1131 143294 0.78 144425 34 983 122793 0.79 123776 35 1012 125655 0.80 126667 36 981 125508 0.78 126489 37 970 115449 0.83 116419 38 1019 120620 0.84 121639 39 1010 113109 0.89 114119 40 928 112092 0.82 113020 41 913 109408 0.83 110321 42 981 104049 0.93 105030 43 987 106677 0.92 107664 44 884 105972 0.83 106856 45 867 101232 0.85 102099 46 885 100745 0.87 101630 47 896 103122 0.86 104018 48 893 99369 0.89 100262 49 868 102395 0.84 103263 50 872 99111 0.87 99983 51 871 93989 0.92 94860 52 882 92396 0.95 93278 53 918 101493 0.90 102411 54 809 93954 0.85 94763 55 786 91651 0.85 92437 56 812 93397 0.86 94209 57 824 88550 0.92 89374 58 747 87663 0.84 88410 59 735 89467 0.81 90202 60 818 87014 0.93 87832 61 756 86097 0.87 86853 62 792 87649 0.90 88441 63 779 86893 0.89 87672 64 706 82561 0.85 83267 65 723 83739 0.86 84462 66 695 79384 0.87 80079 67 716 84130 0.84 84846 68 630 81476 0.77 82106 69 708 81030 0.87 81738 70 625 79757 0.78 80382 71 672 80918 0.82 81590 72 642 75724 0.84 76366 73 616 74854 0.82 75470 74 615 76489 0.80 77104 75 531 74152 0.71 74683 76 607 70979 0.85 71586 77 609 74552 0.81 75161 78 610 69943 0.86 70553 79 606 69612 0.86 70218 80 574 69082 0.82 69656 81 544 66720 0.81 67264 82 537 65330 0.82 65867 83 516 66088 0.77 66604 84 518 64604 0.80 65122 85 575 69770 0.82 70345 86 503 63997 0.78 64500 87 532 63799 0.83 64331 88 550 60457 0.90 61007 89 534 63808 0.83 64342 90 564 62551 0.89 63115 91 542 64296 0.84 64838 92 527 61412 0.85 61939 93 476 59172 0.80 59648 94 533 58085 0.91 58618 95 540 59531 0.90 60071 96 568 57008 0.99 57576 97 526 56370 0.92 56896 98 409 55462 0.73 55871 99 343 0 100.00 343 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 43137 206560 17.28 249697 2 34889 169664 17.06 204553 3 35009 170296 17.05 205305 4 34049 163212 17.26 197261 5 6255 326493 1.88 332748 6 6187 446618 1.37 452805 7 6719 610797 1.09 617516 8 7291 601160 1.20 608451 9 7484 564914 1.31 572398 10 6875 580568 1.17 587443 11 7284 568778 1.26 576062 12 7070 530916 1.31 537986 13 6588 547581 1.19 554169 14 6809 548124 1.23 554933 15 6907 559646 1.22 566553 16 6266 534538 1.16 540804 17 6670 530041 1.24 536711 18 6708 528921 1.25 535629 19 5926 494743 1.18 500669 20 6296 516949 1.20 523245 21 6370 492250 1.28 498620 22 5859 476897 1.21 482756 23 5985 468973 1.26 474958 24 5810 451359 1.27 457169 25 5807 449806 1.27 455613 26 5963 446314 1.32 452277 27 6245 475502 1.30 481747 28 5410 453007 1.18 458417 29 5549 440662 1.24 446211 30 5830 431588 1.33 437418 31 5320 426432 1.23 431752 32 5412 414617 1.29 420029 33 5367 407984 1.30 413351 34 5291 405187 1.29 410478 35 5840 416942 1.38 422782 36 5318 410848 1.28 416166 37 4894 407465 1.19 412359 38 5513 423753 1.28 429266 39 5332 391628 1.34 396960 40 5051 407781 1.22 412832 41 5038 386722 1.29 391760 42 5009 393856 1.26 398865 43 5082 376501 1.33 381583 44 4771 373371 1.26 378142 45 5021 372997 1.33 378018 46 4495 376277 1.18 380772 47 4540 367451 1.22 371991 48 4731 360132 1.30 364863 49 4476 365528 1.21 370004 50 4691 359988 1.29 364679 51 4485 352787 1.26 357272 52 4237 337386 1.24 341623 53 4167 335458 1.23 339625 54 4079 327824 1.23 331903 55 4224 336451 1.24 340675 56 4100 326908 1.24 331008 57 4079 336675 1.20 340754 58 3839 324583 1.17 328422 59 3934 312211 1.24 316145 60 3995 321150 1.23 325145 61 3983 307036 1.28 311019 62 3785 305108 1.23 308893 63 3761 305343 1.22 309104 64 3564 295108 1.19 298672 65 3573 298602 1.18 302175 66 3644 289093 1.24 292737 67 3484 288883 1.19 292367 68 3560 296535 1.19 300095 69 3589 286787 1.24 290376 70 3278 277824 1.17 281102 71 3435 275935 1.23 279370 72 3353 273166 1.21 276519 73 3226 270804 1.18 274030 74 3172 270902 1.16 274074 75 3183 268260 1.17 271443 76 3128 259430 1.19 262558 77 3117 257333 1.20 260450 78 3235 258060 1.24 261295 79 3082 261549 1.16 264631 80 3111 252667 1.22 255778 81 3238 252129 1.27 255367 82 2938 247541 1.17 250479 83 3104 245432 1.25 248536 84 3120 243625 1.26 246745 85 2943 239970 1.21 242913 86 2926 238871 1.21 241797 87 2926 235844 1.23 238770 88 2739 228771 1.18 231510 89 2883 228403 1.25 231286 90 2800 226763 1.22 229563 91 2767 224467 1.22 227234 92 2599 221080 1.16 223679 93 2562 219485 1.15 222047 94 2556 216333 1.17 218889 95 2565 212936 1.19 215501 96 2492 209824 1.17 212316 97 2245 209579 1.06 211824 98 2096 201632 1.03 203728 99 1585 0 100.00 1585