EPI-209_S29_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 8945509 lines in total Total number of methylation call strings processed: 17891018 Final Cytosine Methylation Report ================================= Total number of C's analysed: 181303125 Total methylated C's in CpG context: 8133825 Total methylated C's in CHG context: 907176 Total methylated C's in CHH context: 2249034 Total C to T conversions in CpG context: 17357263 Total C to T conversions in CHG context: 37254559 Total C to T conversions in CHH context: 115401268 C methylated in CpG context: 31.9% C methylated in CHG context: 2.4% C methylated in CHH context: 1.9%