/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-209_S29_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-209_S29_L004_R2_001_val_2.fq.gz
Data processed at 05:39 on 2019-12-21
Alignment Stats
Sequence pairs analysed in total
29638248
Paired-end alignments with a unique best hit
12390019
Pairs without alignments under any condition
14317340
Pairs that did not map uniquely
2930889
Genomic sequence context not extractable (edges of chromosomes)
5
Cytosine Methylation
Total C's analysed
367398872
Methylated C's in CpG context
15426958
Methylated C's in CHG context
1845531
Methylated C's in CHH context
4197293
Methylated C's in Unknown context
75507
Unmethylated C's in CpG context
38606002
Unmethylated C's in CHG context
78585196
Unmethylated C's in CHH context
228737892
Unmethylated C's in Unknown context
791989
Percentage methylation (CpG context)
28.6%
Percentage methylation (CHG context)
2.3%
Percentage methylation (CHH context)
1.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
6084990
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
6305024
original bottom strand
Deduplication
Alignments analysed
12390014
Unique alignments
8945509
Duplicates removed
3444505
Duplicated alignments were found at 2000861 different positions
