CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 144641 242701 37.34 387342 2 136896 266906 33.90 403802 3 127532 236401 35.04 363933 4 132380 189878 41.08 322258 5 126923 168525 42.96 295448 6 131826 139907 48.51 271733 7 144715 135626 51.62 280341 8 68196 159156 30.00 227352 9 61134 147714 29.27 208848 10 60846 141268 30.10 202114 11 62941 143317 30.52 206258 12 61124 146523 29.44 207647 13 61009 147315 29.29 208324 14 58485 148174 28.30 206659 15 57204 150527 27.54 207731 16 53269 148800 26.36 202069 17 50839 144659 26.00 195498 18 52464 147917 26.18 200381 19 51848 148522 25.88 200370 20 52578 151009 25.83 203587 21 52915 151611 25.87 204526 22 51567 149493 25.65 201060 23 51699 148708 25.80 200407 24 51024 148918 25.52 199942 25 50910 147344 25.68 198254 26 50242 144287 25.83 194529 27 50607 148853 25.37 199460 28 51768 147559 25.97 199327 29 50920 146821 25.75 197741 30 49597 146031 25.35 195628 31 50687 142500 26.24 193187 32 49378 139226 26.18 188604 33 49550 140487 26.07 190037 34 50493 139173 26.62 189666 35 49164 137678 26.31 186842 36 48618 138569 25.97 187187 37 47013 134280 25.93 181293 38 47090 133621 26.06 180711 39 47404 136304 25.80 183708 40 47272 133102 26.21 180374 41 46766 132920 26.03 179686 42 48061 134741 26.29 182802 43 47059 131149 26.41 178208 44 45777 129771 26.08 175548 45 46417 128465 26.54 174882 46 46517 128580 26.57 175097 47 45304 125740 26.49 171044 48 44862 125471 26.34 170333 49 45691 125206 26.74 170897 50 44304 125768 26.05 170072 51 44017 124824 26.07 168841 52 44068 126991 25.76 171059 53 42765 120616 26.18 163381 54 41656 118861 25.95 160517 55 41239 114809 26.43 156048 56 40822 114377 26.30 155199 57 41044 114998 26.30 156042 58 41221 114811 26.42 156032 59 40555 112553 26.49 153108 60 39208 112833 25.79 152041 61 39734 109694 26.59 149428 62 38925 110554 26.04 149479 63 37963 108152 25.98 146115 64 37311 107277 25.81 144588 65 37373 106305 26.01 143678 66 38024 106325 26.34 144349 67 37074 102702 26.52 139776 68 36153 102663 26.04 138816 69 35587 101100 26.04 136687 70 35193 100480 25.94 135673 71 34587 97989 26.09 132576 72 33799 97823 25.68 131622 73 33481 96126 25.83 129607 74 33029 94756 25.85 127785 75 31886 94547 25.22 126433 76 32105 92579 25.75 124684 77 32639 91545 26.28 124184 78 32067 92515 25.74 124582 79 31638 90356 25.93 121994 80 30893 90053 25.54 120946 81 30458 88582 25.59 119040 82 29662 87029 25.42 116691 83 30235 87819 25.61 118054 84 29874 86314 25.71 116188 85 29282 85603 25.49 114885 86 28329 83529 25.33 111858 87 27676 82471 25.13 110147 88 28099 82449 25.42 110548 89 27181 80996 25.13 108177 90 26987 80817 25.03 107804 91 26755 79029 25.29 105784 92 26230 78238 25.11 104468 93 25922 78246 24.88 104168 94 25814 76839 25.15 102653 95 25501 75176 25.33 100677 96 25452 76319 25.01 101771 97 24734 73151 25.27 97885 98 23136 68587 25.22 91723 99 17920 54056 24.90 71976 100 24210 68730 26.05 92940 101 23095 68971 25.09 92066 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 192477 296397 39.37 488874 2 109714 283196 27.92 392910 3 42047 269160 13.51 311207 4 22393 268905 7.69 291298 5 14641 248738 5.56 263379 6 12028 233605 4.90 245633 7 9870 301468 3.17 311338 8 4241 329605 1.27 333846 9 3629 311331 1.15 314960 10 3565 297457 1.18 301022 11 3670 298597 1.21 302267 12 3556 297491 1.18 301047 13 3246 287385 1.12 290631 14 2970 287508 1.02 290478 15 2992 294590 1.01 297582 16 2748 294799 0.92 297547 17 2655 292489 0.90 295144 18 2605 288831 0.89 291436 19 2522 290427 0.86 292949 20 2867 303295 0.94 306162 21 2767 305847 0.90 308614 22 2868 301744 0.94 304612 23 2868 304903 0.93 307771 24 2902 305675 0.94 308577 25 2997 297393 1.00 300390 26 3122 299222 1.03 302344 27 3116 301752 1.02 304868 28 3252 299728 1.07 302980 29 3298 301438 1.08 304736 30 3305 303225 1.08 306530 31 3317 294146 1.12 297463 32 3362 297629 1.12 300991 33 3467 295929 1.16 299396 34 3556 290642 1.21 294198 35 3497 290054 1.19 293551 36 3621 289169 1.24 292790 37 3404 281158 1.20 284562 38 3533 285182 1.22 288715 39 3509 282384 1.23 285893 40 3379 279529 1.19 282908 41 3495 278485 1.24 281980 42 3537 277293 1.26 280830 43 3465 272160 1.26 275625 44 3519 272633 1.27 276152 45 3459 270041 1.26 273500 46 3401 266748 1.26 270149 47 3483 265944 1.29 269427 48 3451 268095 1.27 271546 49 3435 262754 1.29 266189 50 3433 261118 1.30 264551 51 3309 262054 1.25 265363 52 3418 258782 1.30 262200 53 3437 252978 1.34 256415 54 3404 253626 1.32 257030 55 3326 249590 1.32 252916 56 3291 250219 1.30 253510 57 3365 246457 1.35 249822 58 3190 244813 1.29 248003 59 3380 245010 1.36 248390 60 3295 242077 1.34 245372 61 3245 237990 1.35 241235 62 3338 238004 1.38 241342 63 3236 234591 1.36 237827 64 3283 233103 1.39 236386 65 3308 230231 1.42 233539 66 3157 226178 1.38 229335 67 3143 219192 1.41 222335 68 3079 219911 1.38 222990 69 3054 218781 1.38 221835 70 3129 213544 1.44 216673 71 2901 212805 1.34 215706 72 2887 211233 1.35 214120 73 2815 207702 1.34 210517 74 3034 205628 1.45 208662 75 2880 204408 1.39 207288 76 2790 198490 1.39 201280 77 2958 198106 1.47 201064 78 2784 194263 1.41 197047 79 2743 190455 1.42 193198 80 2771 190607 1.43 193378 81 2670 187346 1.41 190016 82 2637 183526 1.42 186163 83 2715 186218 1.44 188933 84 2562 185454 1.36 188016 85 2644 181083 1.44 183727 86 2630 181057 1.43 183687 87 2582 180720 1.41 183302 88 2472 177249 1.38 179721 89 2501 174264 1.41 176765 90 2513 174415 1.42 176928 91 2520 171499 1.45 174019 92 2608 171949 1.49 174557 93 2713 168861 1.58 171574 94 2528 164296 1.52 166824 95 2530 162804 1.53 165334 96 2563 160841 1.57 163404 97 2352 147153 1.57 149505 98 2157 135211 1.57 137368 99 1359 87750 1.53 89109 100 1583 87686 1.77 89269 101 3576 147878 2.36 151454 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 198571 336456 37.11 535027 2 90170 363983 19.85 454153 3 44683 438367 9.25 483050 4 39267 480863 7.55 520130 5 35646 589379 5.70 625025 6 29407 657112 4.28 686519 7 26515 841740 3.05 868255 8 14101 914382 1.52 928483 9 11196 835448 1.32 846644 10 10852 811348 1.32 822200 11 11676 810553 1.42 822229 12 10348 820542 1.25 830890 13 11045 835042 1.31 846087 14 11243 854863 1.30 866106 15 10502 872381 1.19 882883 16 10231 879685 1.15 889916 17 11039 885676 1.23 896715 18 10318 913189 1.12 923507 19 10341 930721 1.10 941062 20 11503 958991 1.19 970494 21 10597 959434 1.09 970031 22 11184 958281 1.15 969465 23 11654 955575 1.20 967229 24 10717 952857 1.11 963574 25 11072 954726 1.15 965798 26 11709 959617 1.21 971326 27 10909 962811 1.12 973720 28 10822 959211 1.12 970033 29 11984 952038 1.24 964022 30 11191 942529 1.17 953720 31 11118 925506 1.19 936624 32 11578 921047 1.24 932625 33 10847 916217 1.17 927064 34 11645 917882 1.25 929527 35 11748 904090 1.28 915838 36 11029 909132 1.20 920161 37 10620 896666 1.17 907286 38 11723 893263 1.30 904986 39 10662 880873 1.20 891535 40 10503 875970 1.18 886473 41 11380 874384 1.28 885764 42 10973 873004 1.24 883977 43 11071 858015 1.27 869086 44 11461 857385 1.32 868846 45 10597 845728 1.24 856325 46 10629 842256 1.25 852885 47 11066 834758 1.31 845824 48 10185 828742 1.21 838927 49 10306 815115 1.25 825421 50 10730 807879 1.31 818609 51 9983 793492 1.24 803475 52 10157 787327 1.27 797484 53 10627 774210 1.35 784837 54 9961 770983 1.28 780944 55 9978 767444 1.28 777422 56 10477 761284 1.36 771761 57 9735 766002 1.25 775737 58 9763 757715 1.27 767478 59 10532 756675 1.37 767207 60 9229 744400 1.22 753629 61 9570 736582 1.28 746152 62 9993 722721 1.36 732714 63 9153 714391 1.27 723544 64 9410 707436 1.31 716846 65 9751 701329 1.37 711080 66 8923 694715 1.27 703638 67 8934 689942 1.28 698876 68 9482 683163 1.37 692645 69 8616 675662 1.26 684278 70 8494 668573 1.25 677067 71 9138 662948 1.36 672086 72 8376 658677 1.26 667053 73 8660 644199 1.33 652859 74 8923 642080 1.37 651003 75 8332 635678 1.29 644010 76 8056 633110 1.26 641166 77 8868 623818 1.40 632686 78 7865 616532 1.26 624397 79 8028 613648 1.29 621676 80 8459 604190 1.38 612649 81 7999 594989 1.33 602988 82 8017 588738 1.34 596755 83 8199 585948 1.38 594147 84 7733 579511 1.32 587244 85 7616 569518 1.32 577134 86 7932 562035 1.39 569967 87 7409 558033 1.31 565442 88 7309 551897 1.31 559206 89 7911 544388 1.43 552299 90 7192 540303 1.31 547495 91 7227 532714 1.34 539941 92 7603 528711 1.42 536314 93 7026 521115 1.33 528141 94 7013 514396 1.35 521409 95 7466 506607 1.45 514073 96 6611 496634 1.31 503245 97 6577 482724 1.34 489301 98 6721 447790 1.48 454511 99 4281 309301 1.37 313582 100 4553 274378 1.63 278931 101 7418 456682 1.60 464100 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 74759 89636 45.48 164395 2 65017 78630 45.26 143647 3 72131 88623 44.87 160754 4 66655 100727 39.82 167382 5 29658 133920 18.13 163578 6 17272 70944 19.58 88216 7 15529 73826 17.38 89355 8 16250 69410 18.97 85660 9 14398 61340 19.01 75738 10 15922 67395 19.11 83317 11 16910 64452 20.78 81362 12 16572 61917 21.11 78489 13 16759 60603 21.66 77362 14 17915 61181 22.65 79096 15 17183 56645 23.27 73828 16 16524 54529 23.26 71053 17 19162 58794 24.58 77956 18 18720 57636 24.52 76356 19 18102 54976 24.77 73078 20 16624 53700 23.64 70324 21 17737 52150 25.38 69887 22 17007 53039 24.28 70046 23 16538 51114 24.45 67652 24 15653 48641 24.35 64294 25 16880 51066 24.84 67946 26 15698 48396 24.49 64094 27 16443 48854 25.18 65297 28 15500 46978 24.81 62478 29 15603 47752 24.63 63355 30 15462 45307 25.44 60769 31 14827 45684 24.50 60511 32 14184 43186 24.72 57370 33 16092 44574 26.53 60666 34 15113 45924 24.76 61037 35 17828 48177 27.01 66005 36 15430 42972 26.42 58402 37 15369 43965 25.90 59334 38 13957 42137 24.88 56094 39 14529 41619 25.88 56148 40 15567 42109 26.99 57676 41 13879 41338 25.14 55217 42 13974 41404 25.23 55378 43 14003 40984 25.47 54987 44 13174 39628 24.95 52802 45 15942 43151 26.98 59093 46 12752 36821 25.72 49573 47 13132 37530 25.92 50662 48 12986 37810 25.57 50796 49 12408 37693 24.77 50101 50 12045 35376 25.40 47421 51 12086 34557 25.91 46643 52 11835 35415 25.05 47250 53 11985 34240 25.93 46225 54 11995 34618 25.73 46613 55 12036 34611 25.80 46647 56 11321 33385 25.32 44706 57 11618 33787 25.59 45405 58 11423 32588 25.95 44011 59 10952 31267 25.94 42219 60 11336 31560 26.43 42896 61 10198 30172 25.26 40370 62 10042 30348 24.86 40390 63 10727 29951 26.37 40678 64 10214 29533 25.70 39747 65 10012 28003 26.34 38015 66 10333 28699 26.47 39032 67 9853 28899 25.43 38752 68 10462 29909 25.91 40371 69 9535 27079 26.04 36614 70 9362 26586 26.04 35948 71 9412 26088 26.51 35500 72 8929 25793 25.72 34722 73 8887 26682 24.99 35569 74 8499 24819 25.51 33318 75 8278 24479 25.27 32757 76 8616 24143 26.30 32759 77 8483 23893 26.20 32376 78 8319 24079 25.68 32398 79 8090 23746 25.41 31836 80 7782 23139 25.17 30921 81 7630 22887 25.00 30517 82 7917 23008 25.60 30925 83 7972 21751 26.82 29723 84 8538 23755 26.44 32293 85 7606 22164 25.55 29770 86 7359 22035 25.04 29394 87 7427 21090 26.04 28517 88 7372 20641 26.32 28013 89 7692 21389 26.45 29081 90 7445 21177 26.01 28622 91 7165 20582 25.82 27747 92 6961 20166 25.66 27127 93 6976 20097 25.77 27073 94 7002 19752 26.17 26754 95 7018 19747 26.22 26765 96 6796 19687 25.66 26483 97 7163 20218 26.16 27381 98 6681 18188 26.86 24869 99 5857 0 100.00 5857 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 24283 119267 16.92 143550 2 25412 122719 17.16 148131 3 23689 124500 15.99 148189 4 25746 128442 16.70 154188 5 2290 240632 0.94 242922 6 1824 297888 0.61 299712 7 1087 161043 0.67 162130 8 1109 169899 0.65 171008 9 965 145022 0.66 145987 10 955 136613 0.69 137568 11 1346 178435 0.75 179781 12 1070 144974 0.73 146044 13 1016 141748 0.71 142764 14 1035 138161 0.74 139196 15 1053 131332 0.80 132385 16 980 121866 0.80 122846 17 959 129733 0.73 130692 18 1058 116302 0.90 117360 19 939 113800 0.82 114739 20 883 112220 0.78 113103 21 979 108920 0.89 109899 22 1004 114651 0.87 115655 23 947 113687 0.83 114634 24 840 104759 0.80 105599 25 864 105674 0.81 106538 26 983 109734 0.89 110717 27 896 103395 0.86 104291 28 803 97637 0.82 98440 29 821 103796 0.78 104617 30 810 100678 0.80 101488 31 752 96458 0.77 97210 32 805 98534 0.81 99339 33 811 112323 0.72 113134 34 781 95924 0.81 96705 35 740 98385 0.75 99125 36 756 97889 0.77 98645 37 682 90543 0.75 91225 38 748 94315 0.79 95063 39 781 88263 0.88 89044 40 778 87165 0.88 87943 41 688 85179 0.80 85867 42 713 80754 0.88 81467 43 740 82901 0.88 83641 44 703 82684 0.84 83387 45 652 77647 0.83 78299 46 649 77701 0.83 78350 47 655 79527 0.82 80182 48 675 77195 0.87 77870 49 714 78501 0.90 79215 50 686 76540 0.89 77226 51 637 72264 0.87 72901 52 609 70326 0.86 70935 53 690 78627 0.87 79317 54 642 72415 0.88 73057 55 618 71023 0.86 71641 56 644 71576 0.89 72220 57 594 68769 0.86 69363 58 615 67192 0.91 67807 59 525 68038 0.77 68563 60 577 67052 0.85 67629 61 575 65865 0.87 66440 62 574 67200 0.85 67774 63 544 66134 0.82 66678 64 531 62227 0.85 62758 65 564 63728 0.88 64292 66 489 60433 0.80 60922 67 514 63715 0.80 64229 68 552 61611 0.89 62163 69 495 61411 0.80 61906 70 474 60615 0.78 61089 71 536 61117 0.87 61653 72 476 57667 0.82 58143 73 472 56670 0.83 57142 74 481 57758 0.83 58239 75 442 55632 0.79 56074 76 436 53377 0.81 53813 77 447 56157 0.79 56604 78 426 52574 0.80 53000 79 414 53160 0.77 53574 80 424 51574 0.82 51998 81 418 50096 0.83 50514 82 398 48982 0.81 49380 83 416 49704 0.83 50120 84 415 48352 0.85 48767 85 394 52019 0.75 52413 86 400 47982 0.83 48382 87 425 47788 0.88 48213 88 395 45537 0.86 45932 89 391 47476 0.82 47867 90 417 46344 0.89 46761 91 385 47819 0.80 48204 92 376 45945 0.81 46321 93 357 44194 0.80 44551 94 352 43209 0.81 43561 95 378 44575 0.84 44953 96 359 42264 0.84 42623 97 340 41901 0.80 42241 98 308 41345 0.74 41653 99 231 0 100.00 231 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 34475 170828 16.79 205303 2 27738 141539 16.39 169277 3 27100 140325 16.19 167425 4 27320 133514 16.99 160834 5 3788 266971 1.40 270759 6 3719 358538 1.03 362257 7 4242 488632 0.86 492874 8 4326 480511 0.89 484837 9 4492 448364 0.99 452856 10 4384 460541 0.94 464925 11 4486 451571 0.98 456057 12 4383 420567 1.03 424950 13 4273 433079 0.98 437352 14 4240 434498 0.97 438738 15 4367 437966 0.99 442333 16 4103 416739 0.97 420842 17 4182 416199 0.99 420381 18 4174 414737 1.00 418911 19 3932 387875 1.00 391807 20 4058 402560 1.00 406618 21 3988 384120 1.03 388108 22 3904 371878 1.04 375782 23 3724 365181 1.01 368905 24 3673 350521 1.04 354194 25 3690 349041 1.05 352731 26 3693 346993 1.05 350686 27 3996 368153 1.07 372149 28 3562 350967 1.00 354529 29 3549 341139 1.03 344688 30 3607 333381 1.07 336988 31 3336 329007 1.00 332343 32 3348 318076 1.04 321424 33 3448 314280 1.09 317728 34 3313 310794 1.05 314107 35 3597 320173 1.11 323770 36 3448 314165 1.09 317613 37 3244 311545 1.03 314789 38 3348 325446 1.02 328794 39 3321 301224 1.09 304545 40 3260 312840 1.03 316100 41 3049 295492 1.02 298541 42 3111 300929 1.02 304040 43 3187 285319 1.10 288506 44 3042 284220 1.06 287262 45 3158 284644 1.10 287802 46 2987 286672 1.03 289659 47 3016 278365 1.07 281381 48 3024 273506 1.09 276530 49 2930 277417 1.05 280347 50 2900 271885 1.06 274785 51 2749 265137 1.03 267886 52 2781 254825 1.08 257606 53 2729 252531 1.07 255260 54 2556 246575 1.03 249131 55 2713 253620 1.06 256333 56 2606 245921 1.05 248527 57 2494 252962 0.98 255456 58 2453 243478 1.00 245931 59 2460 234720 1.04 237180 60 2418 241772 0.99 244190 61 2604 230455 1.12 233059 62 2423 229377 1.05 231800 63 2375 228920 1.03 231295 64 2260 222116 1.01 224376 65 2226 223398 0.99 225624 66 2231 216336 1.02 218567 67 2196 215957 1.01 218153 68 2314 221132 1.04 223446 69 2226 214596 1.03 216822 70 2088 206992 1.00 209080 71 2055 204998 0.99 207053 72 2083 203317 1.01 205400 73 2085 201433 1.02 203518 74 2002 202851 0.98 204853 75 1893 199905 0.94 201798 76 1920 192948 0.99 194868 77 1973 189980 1.03 191953 78 2023 191044 1.05 193067 79 1884 193523 0.96 195407 80 1903 187199 1.01 189102 81 1964 186198 1.04 188162 82 1908 183909 1.03 185817 83 1871 180647 1.03 182518 84 1920 179739 1.06 181659 85 1799 177679 1.00 179478 86 1860 176419 1.04 178279 87 1829 173663 1.04 175492 88 1639 170006 0.95 171645 89 1666 168266 0.98 169932 90 1730 166590 1.03 168320 91 1714 165143 1.03 166857 92 1600 162862 0.97 164462 93 1571 161141 0.97 162712 94 1661 159336 1.03 160997 95 1601 157298 1.01 158899 96 1523 154766 0.97 156289 97 1524 154215 0.98 155739 98 1301 148135 0.87 149436 99 980 0 100.00 980