/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-206_S27_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-206_S27_L004_R2_001_val_2.fq.gz
Data processed at 05:39 on 2019-12-21
Alignment Stats
Sequence pairs analysed in total
20931018
Paired-end alignments with a unique best hit
8694089
Pairs without alignments under any condition
9860951
Pairs that did not map uniquely
2375978
Genomic sequence context not extractable (edges of chromosomes)
2
Cytosine Methylation
Total C's analysed
247081316
Methylated C's in CpG context
10213182
Methylated C's in CHG context
1350781
Methylated C's in CHH context
3265902
Methylated C's in Unknown context
56380
Unmethylated C's in CpG context
26443083
Unmethylated C's in CHG context
53493463
Unmethylated C's in CHH context
152314905
Unmethylated C's in Unknown context
526689
Percentage methylation (CpG context)
27.9%
Percentage methylation (CHG context)
2.5%
Percentage methylation (CHH context)
2.1%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4266342
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4427745
original bottom strand
Deduplication
Alignments analysed
8694087
Unique alignments
6737676
Duplicates removed
1956411
Duplicated alignments were found at 1112526 different positions
