EPI-205_S26_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 4719915 lines in total Total number of methylation call strings processed: 9439830 Final Cytosine Methylation Report ================================= Total number of C's analysed: 85575964 Total methylated C's in CpG context: 3859626 Total methylated C's in CHG context: 469729 Total methylated C's in CHH context: 1198594 Total C to T conversions in CpG context: 8425101 Total C to T conversions in CHG context: 17659824 Total C to T conversions in CHH context: 53963090 C methylated in CpG context: 31.4% C methylated in CHG context: 2.6% C methylated in CHH context: 2.2%