/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-193_S22_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-193_S22_L003_R2_001_val_2.fq.gz
Data processed at 05:39 on 2019-12-21
Alignment Stats
Sequence pairs analysed in total
26770469
Paired-end alignments with a unique best hit
10697352
Pairs without alignments under any condition
13242455
Pairs that did not map uniquely
2830662
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
301211333
Methylated C's in CpG context
12254387
Methylated C's in CHG context
1506836
Methylated C's in CHH context
3959201
Methylated C's in Unknown context
62246
Unmethylated C's in CpG context
30734018
Unmethylated C's in CHG context
63666955
Unmethylated C's in CHH context
189089936
Unmethylated C's in Unknown context
644527
Percentage methylation (CpG context)
28.5%
Percentage methylation (CHG context)
2.3%
Percentage methylation (CHH context)
2.1%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5278754
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5418598
original bottom strand
Deduplication
Alignments analysed
10697352
Unique alignments
8170923
Duplicates removed
2526429
Duplicated alignments were found at 1585629 different positions