/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-188_S21_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-188_S21_L003_R2_001_val_2.fq.gz
Data processed at 05:39 on 2019-12-21
Alignment Stats
Sequence pairs analysed in total
21488138
Paired-end alignments with a unique best hit
8423411
Pairs without alignments under any condition
10776872
Pairs that did not map uniquely
2287855
Genomic sequence context not extractable (edges of chromosomes)
1
Cytosine Methylation
Total C's analysed
235029500
Methylated C's in CpG context
8853859
Methylated C's in CHG context
1292583
Methylated C's in CHH context
3088082
Methylated C's in Unknown context
52541
Unmethylated C's in CpG context
25257864
Unmethylated C's in CHG context
49422337
Unmethylated C's in CHH context
147114775
Unmethylated C's in Unknown context
499727
Percentage methylation (CpG context)
26.0%
Percentage methylation (CHG context)
2.5%
Percentage methylation (CHH context)
2.1%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4160590
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4262820
original bottom strand
Deduplication
Alignments analysed
8423410
Unique alignments
6192833
Duplicates removed
2230577
Duplicated alignments were found at 1361870 different positions