CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 146778 213202 40.77 359980 2 142417 235746 37.66 378163 3 136194 204329 40.00 340523 4 145550 163224 47.14 308774 5 140523 141364 49.85 281887 6 141987 117998 54.61 259985 7 156646 116499 57.35 273145 8 74426 133117 35.86 207543 9 66810 123929 35.03 190739 10 66373 118980 35.81 185353 11 68901 122939 35.92 191840 12 66434 125690 34.58 192124 13 65294 129250 33.56 194544 14 62164 128700 32.57 190864 15 61100 131071 31.79 192171 16 56677 129572 30.43 186249 17 53625 126488 29.77 180113 18 54423 128033 29.83 182456 19 54087 129343 29.49 183430 20 54692 131495 29.37 186187 21 54660 132736 29.17 187396 22 54031 129905 29.37 183936 23 53687 129477 29.31 183164 24 52521 130212 28.74 182733 25 51789 127860 28.83 179649 26 52344 127419 29.12 179763 27 52483 130986 28.61 183469 28 53803 129909 29.29 183712 29 51797 131497 28.26 183294 30 51152 130277 28.19 181429 31 52302 127471 29.09 179773 32 50830 124475 29.00 175305 33 51502 126143 28.99 177645 34 52880 125153 29.70 178033 35 51538 124933 29.20 176471 36 51065 127013 28.68 178078 37 49667 123580 28.67 173247 38 48720 123331 28.32 172051 39 50636 126175 28.64 176811 40 50275 124652 28.74 174927 41 49622 123720 28.63 173342 42 51460 125723 29.04 177183 43 50177 124437 28.74 174614 44 50117 123083 28.94 173200 45 51098 123180 29.32 174278 46 51250 124379 29.18 175629 47 50161 122058 29.13 172219 48 49542 121638 28.94 171180 49 50752 122433 29.31 173185 50 49647 124481 28.51 174128 51 49657 122484 28.85 172141 52 50245 127259 28.31 177504 53 48803 121251 28.70 170054 54 48163 119863 28.66 168026 55 47680 116846 28.98 164526 56 47273 117179 28.75 164452 57 48168 118263 28.94 166431 58 47801 118244 28.79 166045 59 47850 116750 29.07 164600 60 46814 116586 28.65 163400 61 47197 114580 29.17 161777 62 46586 115684 28.71 162270 63 46234 115182 28.64 161416 64 45414 114294 28.44 159708 65 46039 113590 28.84 159629 66 46802 114744 28.97 161546 67 46082 111680 29.21 157762 68 45093 111818 28.74 156911 69 44910 111092 28.79 156002 70 44523 110815 28.66 155338 71 43405 108676 28.54 152081 72 43260 109456 28.33 152716 73 43419 106663 28.93 150082 74 42782 106022 28.75 148804 75 41500 106023 28.13 147523 76 41419 104981 28.29 146400 77 42474 103789 29.04 146263 78 42625 105277 28.82 147902 79 40955 103123 28.43 144078 80 40870 103625 28.28 144495 81 40423 102887 28.21 143310 82 39283 101213 27.96 140496 83 40596 102098 28.45 142694 84 40010 101060 28.36 141070 85 39891 100600 28.39 140491 86 38875 98665 28.26 137540 87 37616 97190 27.90 134806 88 38134 95954 28.44 134088 89 37180 96797 27.75 133977 90 37225 96387 27.86 133612 91 36821 94832 27.97 131653 92 36578 94083 27.99 130661 93 36335 94774 27.71 131109 94 36665 93100 28.25 129765 95 35621 93083 27.68 128704 96 35673 93508 27.61 129181 97 34636 89082 28.00 123718 98 32628 84187 27.93 116815 99 25928 66671 28.00 92599 100 33471 84286 28.42 117757 101 30702 83908 26.79 114610 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 190234 266476 41.65 456710 2 109633 251434 30.36 361067 3 45416 245802 15.60 291218 4 24771 246532 9.13 271303 5 16050 225839 6.64 241889 6 13896 214960 6.07 228856 7 10926 268731 3.91 279657 8 4663 293063 1.57 297726 9 4255 278623 1.50 282878 10 3779 267499 1.39 271278 11 4016 271338 1.46 275354 12 3896 270572 1.42 274468 13 3435 261965 1.29 265400 14 3204 263125 1.20 266329 15 3070 269643 1.13 272713 16 2836 268914 1.04 271750 17 2697 266171 1.00 268868 18 2630 265340 0.98 267970 19 2571 265268 0.96 267839 20 2674 277635 0.95 280309 21 2666 281728 0.94 284394 22 2663 278204 0.95 280867 23 2803 281950 0.98 284753 24 2717 283452 0.95 286169 25 2993 275606 1.07 278599 26 3052 277185 1.09 280237 27 2672 281386 0.94 284058 28 2628 279229 0.93 281857 29 2800 282351 0.98 285151 30 2624 284907 0.91 287531 31 2647 278321 0.94 280968 32 2871 281071 1.01 283942 33 2779 282420 0.97 285199 34 2722 277826 0.97 280548 35 2944 278675 1.05 281619 36 2784 278770 0.99 281554 37 2726 272693 0.99 275419 38 2845 278035 1.01 280880 39 2831 275762 1.02 278593 40 2665 273987 0.96 276652 41 2779 274176 1.00 276955 42 2677 273864 0.97 276541 43 2803 271021 1.02 273824 44 2779 274353 1.00 277132 45 2862 272577 1.04 275439 46 2946 271000 1.08 273946 47 2957 270747 1.08 273704 48 2830 276062 1.01 278892 49 2898 269343 1.06 272241 50 3021 268519 1.11 271540 51 2752 270786 1.01 273538 52 2991 269587 1.10 272578 53 2826 266706 1.05 269532 54 2950 269443 1.08 272393 55 3043 264748 1.14 267791 56 2928 266703 1.09 269631 57 2932 264930 1.09 267862 58 2958 263690 1.11 266648 59 3066 264515 1.15 267581 60 2856 264085 1.07 266941 61 3030 260335 1.15 263365 62 3053 262556 1.15 265609 63 3156 260061 1.20 263217 64 3073 260107 1.17 263180 65 3316 259654 1.26 262970 66 3039 255416 1.18 258455 67 3016 249323 1.20 252339 68 3231 252123 1.27 255354 69 3064 249736 1.21 252800 70 2902 245273 1.17 248175 71 2919 245712 1.17 248631 72 2911 245060 1.17 247971 73 2967 242286 1.21 245253 74 3101 242561 1.26 245662 75 2902 242242 1.18 245144 76 3127 234409 1.32 237536 77 2975 236216 1.24 239191 78 2844 233451 1.20 236295 79 2983 228235 1.29 231218 80 2755 228638 1.19 231393 81 2861 225664 1.25 228525 82 2801 223365 1.24 226166 83 3034 227311 1.32 230345 84 3113 225930 1.36 229043 85 2871 223265 1.27 226136 86 3011 223417 1.33 226428 87 3291 222830 1.46 226121 88 3764 215767 1.71 219531 89 2988 218068 1.35 221056 90 2839 216988 1.29 219827 91 2882 214279 1.33 217161 92 3006 216081 1.37 219087 93 3034 212588 1.41 215622 94 2975 209119 1.40 212094 95 3040 207742 1.44 210782 96 3063 205189 1.47 208252 97 3013 187735 1.58 190748 98 2550 172336 1.46 174886 99 1686 111743 1.49 113429 100 1904 112501 1.66 114405 101 3895 187766 2.03 191661 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 205190 353759 36.71 558949 2 101403 381345 21.01 482748 3 53262 448914 10.61 502176 4 46381 475129 8.89 521510 5 42836 560284 7.10 603120 6 34390 605853 5.37 640243 7 30297 769396 3.79 799693 8 17981 831671 2.12 849652 9 13440 763451 1.73 776891 10 13119 743056 1.73 756175 11 14965 746954 1.96 761919 12 12805 757469 1.66 770274 13 14056 771214 1.79 785270 14 15019 789730 1.87 804749 15 13097 811766 1.59 824863 16 12622 821658 1.51 834280 17 14413 827496 1.71 841909 18 12427 856627 1.43 869054 19 12648 873460 1.43 886108 20 14130 901027 1.54 915157 21 12425 901699 1.36 914124 22 13326 905336 1.45 918662 23 14544 904604 1.58 919148 24 12663 908255 1.38 920918 25 14356 907590 1.56 921946 26 14804 915932 1.59 930736 27 12779 920671 1.37 933450 28 12608 924898 1.34 937506 29 14565 921505 1.56 936070 30 12832 910995 1.39 923827 31 12924 900409 1.42 913333 32 15069 899365 1.65 914434 33 12460 902903 1.36 915363 34 13755 907565 1.49 921320 35 14425 897292 1.58 911717 36 12773 907556 1.39 920329 37 12242 899226 1.34 911468 38 14164 901467 1.55 915631 39 12434 895350 1.37 907784 40 12786 893123 1.41 905909 41 14313 896047 1.57 910360 42 13309 902931 1.45 916240 43 13352 892061 1.47 905413 44 13992 897897 1.53 911889 45 12891 888526 1.43 901417 46 12894 887969 1.43 900863 47 14085 882515 1.57 896600 48 12411 881685 1.39 894096 49 12641 872139 1.43 884780 50 13715 869761 1.55 883476 51 12071 860779 1.38 872850 52 12669 857676 1.46 870345 53 13830 850249 1.60 864079 54 12468 852029 1.44 864497 55 12670 847526 1.47 860196 56 14009 845765 1.63 859774 57 12189 856574 1.40 868763 58 12680 854235 1.46 866915 59 14115 855301 1.62 869416 60 12014 843452 1.40 855466 61 12434 841088 1.46 853522 62 13418 831600 1.59 845018 63 12099 827072 1.44 839171 64 12745 821864 1.53 834609 65 13707 817167 1.65 830874 66 11771 813252 1.43 825023 67 12127 810133 1.47 822260 68 13266 806265 1.62 819531 69 11451 803613 1.40 815064 70 11793 797519 1.46 809312 71 12843 795420 1.59 808263 72 11349 790366 1.42 801715 73 12267 781522 1.55 793789 74 12625 779672 1.59 792297 75 11374 774717 1.45 786091 76 12526 768462 1.60 780988 77 12888 765675 1.66 778563 78 11030 760908 1.43 771938 79 11759 755400 1.53 767159 80 12494 751817 1.63 764311 81 11266 742527 1.49 753793 82 11625 735587 1.56 747212 83 12512 737118 1.67 749630 84 11590 726042 1.57 737632 85 10877 720303 1.49 731180 86 12117 711775 1.67 723892 87 12192 705618 1.70 717810 88 13877 688378 1.98 702255 89 12000 697171 1.69 709171 90 10364 694323 1.47 704687 91 10747 686654 1.54 697401 92 11385 682566 1.64 693951 93 10306 676890 1.50 687196 94 10511 668786 1.55 679297 95 11358 660523 1.69 671881 96 9974 647229 1.52 657203 97 9923 629962 1.55 639885 98 10166 586996 1.70 597162 99 6442 406640 1.56 413082 100 6897 362049 1.87 368946 101 10120 595245 1.67 605365 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 120284 121296 49.79 241580 2 102138 100342 50.44 202480 3 110905 115067 49.08 225972 4 100201 127924 43.92 228125 5 45766 168348 21.37 214114 6 27757 91103 23.35 118860 7 24463 97094 20.12 121557 8 25413 88436 22.32 113849 9 22483 78228 22.32 100711 10 24487 85328 22.30 109815 11 25773 83188 23.65 108961 12 25487 80229 24.11 105716 13 26018 77569 25.12 103587 14 27541 78731 25.92 106272 15 26588 73432 26.58 100020 16 24759 70064 26.11 94823 17 29738 76419 28.01 106157 18 29082 74145 28.17 103227 19 27790 71894 27.88 99684 20 25440 69221 26.87 94661 21 26724 67629 28.32 94353 22 26777 69289 27.87 96066 23 25703 66716 27.81 92419 24 23457 63144 27.09 86601 25 26327 67236 28.14 93563 26 24164 63198 27.66 87362 27 25339 64370 28.25 89709 28 23919 61335 28.06 85254 29 24730 63595 28.00 88325 30 23699 59805 28.38 83504 31 23068 59828 27.83 82896 32 22425 56851 28.29 79276 33 25333 58515 30.21 83848 34 23436 60884 27.79 84320 35 28660 64983 30.61 93643 36 23917 57470 29.39 81387 37 24316 59232 29.10 83548 38 21843 56269 27.96 78112 39 22708 55707 28.96 78415 40 24962 56029 30.82 80991 41 21884 54991 28.47 76875 42 22015 56136 28.17 78151 43 21533 54760 28.22 76293 44 20969 53442 28.18 74411 45 25886 58776 30.58 84662 46 20192 49767 28.86 69959 47 20562 50359 28.99 70921 48 20357 50236 28.84 70593 49 19807 50622 28.12 70429 50 18843 48242 28.09 67085 51 19101 47150 28.83 66251 52 18891 47666 28.38 66557 53 19426 46268 29.57 65694 54 18881 47014 28.65 65895 55 19113 46711 29.04 65824 56 17551 44975 28.07 62526 57 18703 46148 28.84 64851 58 18317 44852 29.00 63169 59 17424 42708 28.98 60132 60 18112 43508 29.39 61620 61 16040 41798 27.73 57838 62 16193 40911 28.36 57104 63 17672 41122 30.06 58794 64 16571 40336 29.12 56907 65 15825 38653 29.05 54478 66 16626 39849 29.44 56475 67 15787 40773 27.91 56560 68 17517 41747 29.56 59264 69 15527 37554 29.25 53081 70 15062 37215 28.81 52277 71 15240 36199 29.63 51439 72 14314 35650 28.65 49964 73 14545 36657 28.41 51202 74 12997 34658 27.27 47655 75 13508 34437 28.17 47945 76 14003 33278 29.62 47281 77 13540 33555 28.75 47095 78 13764 33603 29.06 47367 79 13013 32857 28.37 45870 80 12710 32873 27.88 45583 81 12639 32262 28.15 44901 82 12866 32371 28.44 45237 83 12726 31608 28.70 44334 84 14257 33662 29.75 47919 85 12303 31448 28.12 43751 86 11898 30615 27.99 42513 87 11974 29298 29.01 41272 88 11985 29855 28.64 41840 89 12504 30337 29.19 42841 90 12435 29708 29.51 42143 91 11769 29218 28.71 40987 92 11435 28403 28.70 39838 93 11535 27657 29.43 39192 94 11709 28174 29.36 39883 95 11493 28034 29.08 39527 96 10915 27997 28.05 38912 97 12331 29320 29.61 41651 98 10659 25714 29.30 36373 99 9652 0 100.00 9652 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 31511 155683 16.83 187194 2 32038 158625 16.80 190663 3 29271 159921 15.47 189192 4 31400 170147 15.58 201547 5 3351 312857 1.06 316208 6 2698 390052 0.69 392750 7 1557 214039 0.72 215596 8 1683 226356 0.74 228039 9 1352 190820 0.70 192172 10 1375 182292 0.75 183667 11 1973 245591 0.80 247564 12 1553 195549 0.79 197102 13 1512 193034 0.78 194546 14 1482 182889 0.80 184371 15 1538 177544 0.86 179082 16 1329 165501 0.80 166830 17 1485 175598 0.84 177083 18 1551 156981 0.98 158532 19 1413 154297 0.91 155710 20 1272 152143 0.83 153415 21 1494 146185 1.01 147679 22 1391 157849 0.87 159240 23 1433 158034 0.90 159467 24 1241 142029 0.87 143270 25 1224 144063 0.84 145287 26 1313 150045 0.87 151358 27 1228 142005 0.86 143233 28 1163 135012 0.85 136175 29 1338 143673 0.92 145011 30 1232 140317 0.87 141549 31 1138 132927 0.85 134065 32 1183 134671 0.87 135854 33 1241 160445 0.77 161686 34 1084 133447 0.81 134531 35 1205 137567 0.87 138772 36 1112 138982 0.79 140094 37 1051 126365 0.82 127416 38 1159 133228 0.86 134387 39 1038 122684 0.84 123722 40 1041 123259 0.84 124300 41 1000 120340 0.82 121340 42 1041 114346 0.90 115387 43 983 116112 0.84 117095 44 1043 115662 0.89 116705 45 936 109663 0.85 110599 46 942 109415 0.85 110357 47 935 112764 0.82 113699 48 971 108301 0.89 109272 49 996 110985 0.89 111981 50 999 107860 0.92 108859 51 880 102545 0.85 103425 52 919 100346 0.91 101265 53 1034 112744 0.91 113778 54 939 103485 0.90 104424 55 952 100595 0.94 101547 56 929 102587 0.90 103516 57 915 96852 0.94 97767 58 845 95229 0.88 96074 59 882 97655 0.90 98537 60 1020 95503 1.06 96523 61 804 95231 0.84 96035 62 792 97614 0.80 98406 63 923 94968 0.96 95891 64 784 89684 0.87 90468 65 831 91837 0.90 92668 66 732 87402 0.83 88134 67 832 93480 0.88 94312 68 722 89138 0.80 89860 69 746 89377 0.83 90123 70 784 88834 0.87 89618 71 726 89654 0.80 90380 72 718 83655 0.85 84373 73 691 82301 0.83 82992 74 713 84156 0.84 84869 75 705 81671 0.86 82376 76 665 78373 0.84 79038 77 732 82362 0.88 83094 78 669 77396 0.86 78065 79 688 77629 0.88 78317 80 575 75428 0.76 76003 81 665 73488 0.90 74153 82 615 71999 0.85 72614 83 586 73264 0.79 73850 84 593 71206 0.83 71799 85 660 77583 0.84 78243 86 581 70607 0.82 71188 87 628 69983 0.89 70611 88 539 67205 0.80 67744 89 600 70133 0.85 70733 90 636 69436 0.91 70072 91 587 71839 0.81 72426 92 630 67655 0.92 68285 93 544 65081 0.83 65625 94 634 64448 0.97 65082 95 604 66394 0.90 66998 96 593 62459 0.94 63052 97 643 62618 1.02 63261 98 477 61397 0.77 61874 99 413 0 100.00 413 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 43076 209522 17.05 252598 2 34152 170998 16.65 205150 3 34572 173419 16.62 207991 4 33592 167215 16.73 200807 5 6250 342701 1.79 348951 6 6142 464551 1.30 470693 7 6800 641620 1.05 648420 8 7094 629206 1.11 636300 9 7430 593472 1.24 600902 10 6963 609467 1.13 616430 11 7053 598358 1.16 605411 12 7121 560967 1.25 568088 13 6927 580235 1.18 587162 14 6953 579486 1.19 586439 15 7069 595973 1.17 603042 16 6523 573113 1.13 579636 17 6836 568374 1.19 575210 18 6923 566823 1.21 573746 19 6325 526568 1.19 532893 20 6559 556792 1.16 563351 21 6282 530508 1.17 536790 22 6202 509506 1.20 515708 23 6120 501451 1.21 507571 24 5992 484514 1.22 490506 25 6117 481171 1.26 487288 26 6053 479988 1.25 486041 27 6302 514041 1.21 520343 28 5624 485987 1.14 491611 29 5932 472304 1.24 478236 30 5946 461918 1.27 467864 31 5468 457085 1.18 462553 32 5417 443841 1.21 449258 33 5621 439779 1.26 445400 34 5467 435837 1.24 441304 35 6009 451196 1.31 457205 36 5416 443968 1.21 449384 37 5370 440516 1.20 445886 38 5622 464435 1.20 470057 39 5470 422619 1.28 428089 40 5360 445608 1.19 450968 41 5307 417125 1.26 422432 42 5243 428476 1.21 433719 43 5165 407520 1.25 412685 44 4995 402062 1.23 407057 45 5178 403486 1.27 408664 46 4938 407954 1.20 412892 47 4905 397857 1.22 402762 48 4922 391452 1.24 396374 49 4777 400585 1.18 405362 50 4714 390259 1.19 394973 51 4762 381305 1.23 386067 52 4405 363685 1.20 368090 53 4435 363130 1.21 367565 54 4214 356493 1.17 360707 55 4460 368594 1.20 373054 56 4304 353907 1.20 358211 57 4238 367913 1.14 372151 58 4073 351184 1.15 355257 59 4171 338471 1.22 342642 60 4312 348254 1.22 352566 61 3951 335025 1.17 338976 62 4052 330793 1.21 334845 63 4024 332218 1.20 336242 64 3827 320770 1.18 324597 65 3668 327418 1.11 331086 66 3783 312893 1.19 316676 67 3646 313798 1.15 317444 68 3941 324077 1.20 328018 69 3852 314865 1.21 318717 70 3563 301723 1.17 305286 71 3602 299525 1.19 303127 72 3594 298387 1.19 301981 73 3524 295310 1.18 298834 74 3432 296530 1.14 299962 75 3347 293770 1.13 297117 76 3401 282555 1.19 285956 77 3438 279599 1.21 283037 78 3391 282033 1.19 285424 79 3286 286003 1.14 289289 80 3354 276196 1.20 279550 81 3363 276691 1.20 280054 82 3198 270955 1.17 274153 83 3236 268440 1.19 271676 84 3419 265173 1.27 268592 85 2991 263109 1.12 266100 86 3103 262459 1.17 265562 87 3132 258807 1.20 261939 88 2914 251348 1.15 254262 89 3092 250106 1.22 253198 90 3114 248200 1.24 251314 91 2850 245803 1.15 248653 92 2779 243262 1.13 246041 93 2900 240973 1.19 243873 94 2768 238428 1.15 241196 95 2776 233764 1.17 236540 96 2585 229563 1.11 232148 97 2541 229062 1.10 231603 98 2184 219420 0.99 221604 99 1627 0 100.00 1627