/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-176_S15_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-176_S15_L003_R2_001_val_2.fq.gz
Data processed at 05:39 on 2019-12-21
Alignment Stats
Sequence pairs analysed in total
36345555
Paired-end alignments with a unique best hit
13724724
Pairs without alignments under any condition
19810124
Pairs that did not map uniquely
2810707
Genomic sequence context not extractable (edges of chromosomes)
7
Cytosine Methylation
Total C's analysed
415508402
Methylated C's in CpG context
15449887
Methylated C's in CHG context
1795361
Methylated C's in CHH context
4293575
Methylated C's in Unknown context
73998
Unmethylated C's in CpG context
44600919
Unmethylated C's in CHG context
86098830
Unmethylated C's in CHH context
263269830
Unmethylated C's in Unknown context
887032
Percentage methylation (CpG context)
25.7%
Percentage methylation (CHG context)
2.0%
Percentage methylation (CHH context)
1.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
6759192
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
6965525
original bottom strand
Deduplication
Alignments analysed
13724717
Unique alignments
10094686
Duplicates removed
3630031
Duplicated alignments were found at 2189122 different positions
