EPI-175_S14_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 7924620 lines in total Total number of methylation call strings processed: 15849240 Final Cytosine Methylation Report ================================= Total number of C's analysed: 169230320 Total methylated C's in CpG context: 6854838 Total methylated C's in CHG context: 805593 Total methylated C's in CHH context: 2153742 Total C to T conversions in CpG context: 16729782 Total C to T conversions in CHG context: 34594121 Total C to T conversions in CHH context: 108092244 C methylated in CpG context: 29.1% C methylated in CHG context: 2.3% C methylated in CHH context: 2.0%