/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-169_S12_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-169_S12_L002_R2_001_val_2.fq.gz
Data processed at 05:39 on 2019-12-21
Alignment Stats
Sequence pairs analysed in total
21392200
Paired-end alignments with a unique best hit
8408059
Pairs without alignments under any condition
10932504
Pairs that did not map uniquely
2051637
Genomic sequence context not extractable (edges of chromosomes)
4
Cytosine Methylation
Total C's analysed
245148711
Methylated C's in CpG context
9715161
Methylated C's in CHG context
1293014
Methylated C's in CHH context
3765782
Methylated C's in Unknown context
64209
Unmethylated C's in CpG context
25600954
Unmethylated C's in CHG context
52728521
Unmethylated C's in CHH context
152045279
Unmethylated C's in Unknown context
533680
Percentage methylation (CpG context)
27.5%
Percentage methylation (CHG context)
2.4%
Percentage methylation (CHH context)
2.4%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4126394
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4281661
original bottom strand
Deduplication
Alignments analysed
8408055
Unique alignments
6423431
Duplicates removed
1984624
Duplicated alignments were found at 1201335 different positions