CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 95586 149386 39.02 244972 2 88086 160639 35.42 248725 3 88230 147024 37.50 235254 4 94243 129659 42.09 223902 5 91469 114184 44.48 205653 6 90269 95670 48.55 185939 7 99441 95156 51.10 194597 8 50798 106870 32.22 157668 9 44896 100691 30.84 145587 10 45295 97867 31.64 143162 11 47708 100543 32.18 148251 12 45812 100286 31.36 146098 13 45270 102936 30.55 148206 14 43153 103083 29.51 146236 15 42338 104191 28.89 146529 16 39904 103167 27.89 143071 17 37764 100632 27.29 138396 18 39328 103369 27.56 142697 19 38580 102924 27.26 141504 20 39213 104243 27.33 143456 21 39082 105485 27.03 144567 22 38564 103155 27.21 141719 23 38314 102963 27.12 141277 24 37652 103296 26.71 140948 25 37565 101863 26.94 139428 26 36743 100873 26.70 137616 27 36794 103188 26.28 139982 28 38175 103131 27.02 141306 29 36945 102783 26.44 139728 30 36806 102843 26.36 139649 31 37181 101248 26.86 138429 32 36033 99477 26.59 135510 33 36654 100218 26.78 136872 34 37291 100127 27.14 137418 35 36871 100570 26.83 137441 36 36353 100125 26.64 136478 37 35488 98298 26.53 133786 38 35175 97561 26.50 132736 39 36341 98937 26.86 135278 40 35334 97489 26.60 132823 41 35815 97680 26.83 133495 42 36014 98261 26.82 134275 43 35595 97840 26.68 133435 44 35107 96908 26.59 132015 45 34956 96384 26.61 131340 46 35733 96089 27.11 131822 47 34977 94393 27.04 129370 48 34771 94376 26.92 129147 49 35532 94859 27.25 130391 50 34318 95475 26.44 129793 51 34958 94310 27.04 129268 52 34890 95059 26.85 129949 53 34028 91397 27.13 125425 54 33427 91380 26.78 124807 55 33289 88845 27.26 122134 56 32592 87942 27.04 120534 57 32746 88819 26.94 121565 58 32688 88882 26.89 121570 59 32623 87204 27.23 119827 60 31635 87416 26.57 119051 61 31624 86022 26.88 117646 62 31314 85047 26.91 116361 63 30542 84153 26.63 114695 64 30284 83532 26.61 113816 65 30386 82849 26.83 113235 66 30574 82564 27.02 113138 67 30147 80480 27.25 110627 68 29745 80224 27.05 109969 69 29145 79222 26.89 108367 70 28970 78857 26.87 107827 71 28466 76888 27.02 105354 72 27908 76785 26.66 104693 73 27556 75297 26.79 102853 74 27265 75054 26.65 102319 75 26417 73692 26.39 100109 76 26281 73020 26.47 99301 77 26550 72284 26.86 98834 78 26038 72017 26.55 98055 79 25633 70586 26.64 96219 80 25319 70400 26.45 95719 81 24928 69567 26.38 94495 82 24330 68577 26.19 92907 83 24884 68652 26.60 93536 84 24254 67915 26.31 92169 85 23995 67087 26.34 91082 86 23347 65089 26.40 88436 87 22420 64905 25.67 87325 88 22838 64796 26.06 87634 89 22264 63497 25.96 85761 90 21941 62978 25.84 84919 91 21558 61738 25.88 83296 92 21355 61043 25.92 82398 93 21220 61221 25.74 82441 94 20934 60701 25.64 81635 95 20599 59561 25.70 80160 96 20849 59792 25.85 80641 97 20040 56959 26.03 76999 98 18648 53956 25.68 72604 99 14898 42268 26.06 57166 100 19095 53257 26.39 72352 101 17593 52873 24.97 70466 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 112059 220972 33.65 333031 2 63926 208073 23.50 271999 3 30799 202557 13.20 233356 4 17559 204973 7.89 222532 5 11132 184029 5.70 195161 6 9568 176461 5.14 186029 7 6631 212643 3.02 219274 8 3335 228026 1.44 231361 9 2798 217838 1.27 220636 10 2862 211165 1.34 214027 11 2916 211898 1.36 214814 12 2809 212084 1.31 214893 13 2645 206163 1.27 208808 14 2366 206312 1.13 208678 15 2278 209773 1.07 212051 16 2185 209703 1.03 211888 17 2109 207082 1.01 209191 18 2080 206452 1.00 208532 19 1997 205599 0.96 207596 20 2161 214463 1.00 216624 21 2170 217358 0.99 219528 22 2218 214143 1.03 216361 23 2248 216488 1.03 218736 24 2240 219406 1.01 221646 25 2144 213777 0.99 215921 26 2380 214729 1.10 217109 27 2090 217189 0.95 219279 28 2230 215896 1.02 218126 29 2497 217664 1.13 220161 30 2217 219997 1.00 222214 31 2274 213783 1.05 216057 32 2321 217188 1.06 219509 33 2352 217153 1.07 219505 34 2324 213911 1.07 216235 35 2515 213453 1.16 215968 36 2394 215296 1.10 217690 37 2553 208817 1.21 211370 38 2512 212528 1.17 215040 39 2293 211503 1.07 213796 40 2422 210496 1.14 212918 41 2368 208500 1.12 210868 42 2350 209624 1.11 211974 43 2366 205889 1.14 208255 44 2472 208204 1.17 210676 45 2446 206434 1.17 208880 46 2582 203798 1.25 206380 47 2720 203897 1.32 206617 48 2521 207068 1.20 209589 49 2632 201938 1.29 204570 50 2724 200768 1.34 203492 51 2676 202023 1.31 204699 52 2751 200486 1.35 203237 53 2693 197339 1.35 200032 54 2774 198891 1.38 201665 55 2700 194756 1.37 197456 56 2700 195837 1.36 198537 57 2776 193426 1.41 196202 58 2617 191569 1.35 194186 59 2660 191363 1.37 194023 60 2735 190894 1.41 193629 61 2692 186434 1.42 189126 62 2691 187388 1.42 190079 63 2725 184820 1.45 187545 64 2708 183260 1.46 185968 65 2831 182389 1.53 185220 66 2658 178334 1.47 180992 67 2687 173862 1.52 176549 68 2818 175287 1.58 178105 69 2718 172461 1.55 175179 70 2462 168596 1.44 171058 71 2460 167937 1.44 170397 72 2457 166613 1.45 169070 73 2537 163837 1.52 166374 74 2672 162499 1.62 165171 75 2449 162063 1.49 164512 76 2311 156282 1.46 158593 77 2500 156482 1.57 158982 78 2399 154646 1.53 157045 79 2358 150690 1.54 153048 80 2339 150592 1.53 152931 81 2253 147851 1.50 150104 82 2219 145627 1.50 147846 83 2359 146568 1.58 148927 84 2261 146413 1.52 148674 85 2380 143122 1.64 145502 86 2255 142541 1.56 144796 87 2206 142230 1.53 144436 88 2402 139346 1.69 141748 89 2247 138170 1.60 140417 90 2161 136904 1.55 139065 91 2062 134787 1.51 136849 92 2222 134892 1.62 137114 93 2296 132455 1.70 134751 94 2130 130037 1.61 132167 95 2148 127183 1.66 129331 96 2187 126306 1.70 128493 97 2079 116274 1.76 118353 98 1845 105797 1.71 107642 99 1181 69025 1.68 70206 100 1368 69469 1.93 70837 101 2892 114793 2.46 117685 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 154145 313791 32.94 467936 2 79178 327943 19.45 407121 3 42823 365178 10.50 408001 4 35479 396134 8.22 431613 5 33053 451770 6.82 484823 6 26648 489085 5.17 515733 7 21804 601783 3.50 623587 8 15229 643165 2.31 658394 9 11617 601036 1.90 612653 10 11227 587955 1.87 599182 11 13519 587891 2.25 601410 12 11314 592653 1.87 603967 13 12241 602981 1.99 615222 14 13902 615705 2.21 629607 15 11596 630318 1.81 641914 16 11544 634721 1.79 646265 17 13767 641193 2.10 654960 18 11567 661490 1.72 673057 19 11383 674280 1.66 685663 20 13673 692365 1.94 706038 21 11619 695413 1.64 707032 22 12362 697002 1.74 709364 23 13971 698968 1.96 712939 24 11943 699436 1.68 711379 25 12463 703440 1.74 715903 26 14127 707290 1.96 721417 27 11938 708964 1.66 720902 28 11665 711347 1.61 723012 29 13900 708617 1.92 722517 30 11872 704435 1.66 716307 31 12184 693927 1.73 706111 32 13327 694638 1.88 707965 33 11761 693847 1.67 705608 34 12655 695652 1.79 708307 35 13714 687761 1.96 701475 36 11893 693995 1.68 705888 37 11662 686379 1.67 698041 38 13467 687335 1.92 700802 39 11208 681863 1.62 693071 40 11695 677327 1.70 689022 41 13187 678820 1.91 692007 42 11761 680353 1.70 692114 43 12128 673465 1.77 685593 44 13245 674088 1.93 687333 45 11657 664901 1.72 676558 46 11631 663688 1.72 675319 47 13154 658182 1.96 671336 48 11172 655377 1.68 666549 49 11517 649127 1.74 660644 50 12864 643670 1.96 656534 51 10916 634867 1.69 645783 52 11546 631258 1.80 642804 53 12702 622836 2.00 635538 54 11152 621133 1.76 632285 55 11214 612995 1.80 624209 56 12828 612399 2.05 625227 57 10644 613313 1.71 623957 58 10849 609387 1.75 620236 59 12698 605232 2.05 617930 60 10326 598934 1.69 609260 61 11101 591046 1.84 602147 62 11906 581165 2.01 593071 63 10403 578256 1.77 588659 64 11098 570623 1.91 581721 65 11837 566230 2.05 578067 66 9945 558831 1.75 568776 67 10276 556017 1.81 566293 68 11593 550551 2.06 562144 69 9640 545603 1.74 555243 70 9857 539171 1.80 549028 71 11151 534699 2.04 545850 72 9722 530569 1.80 540291 73 10381 521104 1.95 531485 74 10865 518556 2.05 529421 75 9306 514688 1.78 523994 76 9425 509815 1.82 519240 77 10935 503780 2.12 514715 78 8765 497170 1.73 505935 79 9122 493062 1.82 502184 80 10390 486672 2.09 497062 81 9075 479743 1.86 488818 82 9474 474134 1.96 483608 83 10397 472620 2.15 483017 84 8803 465102 1.86 473905 85 9197 456701 1.97 465898 86 9706 452168 2.10 461874 87 8486 447469 1.86 455955 88 8779 442403 1.95 451182 89 9406 436872 2.11 446278 90 8112 433764 1.84 441876 91 8370 426917 1.92 435287 92 8923 423966 2.06 432889 93 7847 417957 1.84 425804 94 8036 412208 1.91 420244 95 8908 406608 2.14 415516 96 7612 397512 1.88 405124 97 7438 386736 1.89 394174 98 7988 358602 2.18 366590 99 4661 248225 1.84 252886 100 5139 220818 2.27 225957 101 8081 362032 2.18 370113 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 63305 73522 46.27 136827 2 54874 63102 46.51 117976 3 60080 71798 45.56 131878 4 55039 81116 40.42 136155 5 24451 105580 18.80 130031 6 14611 57159 20.36 71770 7 12871 60134 17.63 73005 8 13446 55060 19.63 68506 9 11846 48515 19.63 60361 10 13132 53183 19.80 66315 11 14218 51501 21.63 65719 12 13640 48361 22.00 62001 13 13870 47960 22.43 61830 14 14277 48684 22.68 62961 15 13967 44602 23.85 58569 16 13260 43113 23.52 56373 17 15797 46145 25.50 61942 18 15379 45368 25.32 60747 19 14659 43821 25.07 58480 20 13577 42264 24.31 55841 21 14386 40679 26.13 55065 22 13764 41862 24.74 55626 23 13078 40209 24.54 53287 24 12445 38251 24.55 50696 25 13413 39777 25.22 53190 26 12562 37609 25.04 50171 27 13427 38636 25.79 52063 28 12437 36361 25.49 48798 29 12683 37451 25.30 50134 30 12324 35394 25.83 47718 31 11787 35685 24.83 47472 32 11528 33213 25.77 44741 33 12976 34465 27.35 47441 34 12189 35757 25.42 47946 35 14189 37702 27.34 51891 36 12101 33573 26.49 45674 37 12153 34257 26.19 46410 38 11116 33287 25.03 44403 39 11525 32500 26.18 44025 40 12329 32775 27.33 45104 41 11108 32429 25.51 43537 42 11122 32486 25.50 43608 43 10842 31612 25.54 42454 44 10485 31043 25.25 41528 45 12667 33366 27.52 46033 46 10197 28615 26.27 38812 47 10314 28920 26.29 39234 48 10031 29189 25.58 39220 49 9900 29286 25.26 39186 50 9603 27601 25.81 37204 51 9414 27173 25.73 36587 52 9481 27418 25.69 36899 53 9580 26587 26.49 36167 54 9296 26979 25.63 36275 55 9589 26595 26.50 36184 56 9047 25865 25.91 34912 57 9201 26308 25.91 35509 58 9128 25169 26.61 34297 59 8687 24146 26.46 32833 60 8906 24516 26.65 33422 61 7917 23936 24.85 31853 62 7875 23703 24.94 31578 63 8488 23518 26.52 32006 64 8035 22617 26.21 30652 65 7742 21727 26.27 29469 66 8302 22370 27.07 30672 67 7611 22991 24.87 30602 68 8274 22923 26.52 31197 69 7512 21075 26.28 28587 70 7123 20688 25.61 27811 71 7350 20168 26.71 27518 72 7004 19714 26.21 26718 73 7105 20646 25.60 27751 74 6448 19281 25.06 25729 75 6469 19053 25.35 25522 76 6717 18586 26.55 25303 77 6514 18474 26.07 24988 78 6374 18544 25.58 24918 79 6155 18481 24.98 24636 80 6225 17980 25.72 24205 81 6062 17845 25.36 23907 82 6233 17753 25.99 23986 83 6118 17260 26.17 23378 84 6538 18266 26.36 24804 85 5833 17012 25.53 22845 86 5913 16827 26.00 22740 87 5677 16201 25.95 21878 88 5621 16251 25.70 21872 89 6065 16592 26.77 22657 90 5905 16376 26.50 22281 91 5584 16035 25.83 21619 92 5331 15544 25.54 20875 93 5461 15312 26.29 20773 94 5458 15686 25.81 21144 95 5365 15105 26.21 20470 96 5308 15449 25.57 20757 97 5753 15770 26.73 21523 98 5003 13999 26.33 19002 99 4610 0 100.00 4610 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 19402 95897 16.83 115299 2 20105 100180 16.71 120285 3 18260 99156 15.55 117416 4 20126 103712 16.25 123838 5 1942 192229 1.00 194171 6 1519 235982 0.64 237501 7 888 128707 0.69 129595 8 934 135478 0.68 136412 9 866 113936 0.75 114802 10 807 108484 0.74 109291 11 1093 142014 0.76 143107 12 931 114620 0.81 115551 13 908 111733 0.81 112641 14 974 108964 0.89 109938 15 877 103384 0.84 104261 16 756 95970 0.78 96726 17 875 102271 0.85 103146 18 931 91927 1.00 92858 19 878 89494 0.97 90372 20 759 88827 0.85 89586 21 896 84646 1.05 85542 22 813 90623 0.89 91436 23 780 89356 0.87 90136 24 678 81464 0.83 82142 25 717 82448 0.86 83165 26 774 86153 0.89 86927 27 747 81454 0.91 82201 28 676 77678 0.86 78354 29 700 81449 0.85 82149 30 733 78647 0.92 79380 31 657 75381 0.86 76038 32 690 76902 0.89 77592 33 722 87954 0.81 88676 34 620 74467 0.83 75087 35 688 76857 0.89 77545 36 623 76546 0.81 77169 37 606 71112 0.84 71718 38 649 73502 0.88 74151 39 608 69452 0.87 70060 40 616 68427 0.89 69043 41 595 66353 0.89 66948 42 599 63154 0.94 63753 43 589 64682 0.90 65271 44 554 64620 0.85 65174 45 553 61111 0.90 61664 46 555 60802 0.90 61357 47 554 62234 0.88 62788 48 611 59868 1.01 60479 49 530 61795 0.85 62325 50 569 59581 0.95 60150 51 562 56578 0.98 57140 52 532 55458 0.95 55990 53 538 61256 0.87 61794 54 512 56506 0.90 57018 55 548 55382 0.98 55930 56 503 56274 0.89 56777 57 559 53382 1.04 53941 58 492 52039 0.94 52531 59 468 52848 0.88 53316 60 501 51621 0.96 52122 61 435 51287 0.84 51722 62 459 52148 0.87 52607 63 509 51667 0.98 52176 64 436 48250 0.90 48686 65 446 49334 0.90 49780 66 424 46775 0.90 47199 67 480 49637 0.96 50117 68 418 48315 0.86 48733 69 451 47501 0.94 47952 70 400 47230 0.84 47630 71 449 47679 0.93 48128 72 401 44756 0.89 45157 73 414 43773 0.94 44187 74 393 45190 0.86 45583 75 363 43282 0.83 43645 76 369 41659 0.88 42028 77 417 43951 0.94 44368 78 347 41010 0.84 41357 79 343 40611 0.84 40954 80 342 40307 0.84 40649 81 327 38875 0.83 39202 82 343 38204 0.89 38547 83 350 38535 0.90 38885 84 341 37763 0.89 38104 85 353 40611 0.86 40964 86 324 37046 0.87 37370 87 320 37039 0.86 37359 88 308 35038 0.87 35346 89 327 36786 0.88 37113 90 337 36174 0.92 36511 91 353 37085 0.94 37438 92 351 35619 0.98 35970 93 287 33624 0.85 33911 94 304 33069 0.91 33373 95 322 34774 0.92 35096 96 301 32716 0.91 33017 97 289 32404 0.88 32693 98 230 31843 0.72 32073 99 207 0 100.00 207 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 28788 136032 17.47 164820 2 23287 112442 17.16 135729 3 23475 112225 17.30 135700 4 23295 106202 17.99 129497 5 4700 210219 2.19 214919 6 4445 284594 1.54 289039 7 5128 390639 1.30 395767 8 5151 383408 1.33 388559 9 5373 359572 1.47 364945 10 5368 367541 1.44 372909 11 5234 360172 1.43 365406 12 5029 335850 1.48 340879 13 5030 346269 1.43 351299 14 4880 344918 1.40 349798 15 4891 349601 1.38 354492 16 4702 335241 1.38 339943 17 4670 332886 1.38 337556 18 4724 331219 1.41 335943 19 4583 309807 1.46 314390 20 4665 324384 1.42 329049 21 4344 307760 1.39 312104 22 4480 296453 1.49 300933 23 4352 291339 1.47 295691 24 4040 279731 1.42 283771 25 4323 278502 1.53 282825 26 4098 275920 1.46 280018 27 4378 294399 1.47 298777 28 4035 278885 1.43 282920 29 4010 272790 1.45 276800 30 3973 266108 1.47 270081 31 3992 261080 1.51 265072 32 3823 254042 1.48 257865 33 3753 250998 1.47 254751 34 3913 247397 1.56 251310 35 4226 253957 1.64 258183 36 3661 251378 1.44 255039 37 3780 247941 1.50 251721 38 3837 259541 1.46 263378 39 3713 238297 1.53 242010 40 3614 249172 1.43 252786 41 3598 234985 1.51 238583 42 3522 238854 1.45 242376 43 3610 227582 1.56 231192 44 3465 225720 1.51 229185 45 3427 225344 1.50 228771 46 3272 227233 1.42 230505 47 3322 221576 1.48 224898 48 3201 216951 1.45 220152 49 3212 219974 1.44 223186 50 3125 215019 1.43 218144 51 3096 210311 1.45 213407 52 2962 201655 1.45 204617 53 2984 200754 1.46 203738 54 2732 194685 1.38 197417 55 3032 201166 1.48 204198 56 2904 194742 1.47 197646 57 2794 199779 1.38 202573 58 2731 192584 1.40 195315 59 2754 186432 1.46 189186 60 2804 191907 1.44 194711 61 2689 183137 1.45 185826 62 2611 180944 1.42 183555 63 2592 180685 1.41 183277 64 2553 174673 1.44 177226 65 2512 176968 1.40 179480 66 2455 171185 1.41 173640 67 2489 170368 1.44 172857 68 2517 174941 1.42 177458 69 2496 169895 1.45 172391 70 2389 163429 1.44 165818 71 2411 162356 1.46 164767 72 2311 160124 1.42 162435 73 2393 159274 1.48 161667 74 2292 159343 1.42 161635 75 2190 157986 1.37 160176 76 2237 152650 1.44 154887 77 2324 150488 1.52 152812 78 2207 151077 1.44 153284 79 2171 152806 1.40 154977 80 2233 147466 1.49 149699 81 2119 147071 1.42 149190 82 2105 144987 1.43 147092 83 2100 143693 1.44 145793 84 2061 141774 1.43 143835 85 2120 140562 1.49 142682 86 1935 139078 1.37 141013 87 1951 137036 1.40 138987 88 1845 133164 1.37 135009 89 1920 132900 1.42 134820 90 1903 131585 1.43 133488 91 1912 131194 1.44 133106 92 1798 128944 1.38 130742 93 1763 127261 1.37 129024 94 1813 125285 1.43 127098 95 1748 123334 1.40 125082 96 1630 121412 1.32 123042 97 1657 120004 1.36 121661 98 1410 115959 1.20 117369 99 939 0 100.00 939