/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-160_S7_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-160_S7_L002_R2_001_val_2.fq.gz
Data processed at 05:39 on 2019-12-21
Alignment Stats
Sequence pairs analysed in total
31922572
Paired-end alignments with a unique best hit
12255649
Pairs without alignments under any condition
16675995
Pairs that did not map uniquely
2990928
Genomic sequence context not extractable (edges of chromosomes)
1
Cytosine Methylation
Total C's analysed
356119849
Methylated C's in CpG context
13819770
Methylated C's in CHG context
1872039
Methylated C's in CHH context
4292886
Methylated C's in Unknown context
84309
Unmethylated C's in CpG context
37264731
Unmethylated C's in CHG context
75867945
Unmethylated C's in CHH context
223002478
Unmethylated C's in Unknown context
787408
Percentage methylation (CpG context)
27.1%
Percentage methylation (CHG context)
2.4%
Percentage methylation (CHH context)
1.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
6034016
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
6221632
original bottom strand
Deduplication
Alignments analysed
12255648
Unique alignments
8992066
Duplicates removed
3263582
Duplicated alignments were found at 1915571 different positions