/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-152_S3_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-152_S3_L002_R2_001_val_2.fq.gz
Data processed at 05:39 on 2019-12-21
Alignment Stats
Sequence pairs analysed in total
29855018
Paired-end alignments with a unique best hit
11727816
Pairs without alignments under any condition
15750735
Pairs that did not map uniquely
2376467
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
358780662
Methylated C's in CpG context
14625118
Methylated C's in CHG context
1782524
Methylated C's in CHH context
4106805
Methylated C's in Unknown context
73648
Unmethylated C's in CpG context
34864391
Unmethylated C's in CHG context
74934034
Unmethylated C's in CHH context
228467790
Unmethylated C's in Unknown context
784418
Percentage methylation (CpG context)
29.6%
Percentage methylation (CHG context)
2.3%
Percentage methylation (CHH context)
1.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5811638
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5916178
original bottom strand
Deduplication
Alignments analysed
11727816
Unique alignments
8409770
Duplicates removed
3318046
Duplicated alignments were found at 2042936 different positions