CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 166891 266029 38.55 432920 2 152953 283311 35.06 436264 3 138426 244291 36.17 382717 4 135968 180581 42.95 316549 5 129148 154032 45.61 283180 6 127585 131594 49.23 259179 7 140730 125219 52.92 265949 8 65421 145118 31.07 210539 9 59299 132215 30.96 191514 10 58570 125260 31.86 183830 11 59986 127716 31.96 187702 12 58370 130641 30.88 189011 13 56817 134142 29.75 190959 14 53887 131931 29.00 185818 15 52436 133025 28.27 185461 16 48849 130226 27.28 179075 17 45937 125871 26.74 171808 18 47915 127580 27.30 175495 19 47616 129611 26.87 177227 20 47741 131125 26.69 178866 21 48378 132680 26.72 181058 22 47836 130677 26.80 178513 23 47145 128893 26.78 176038 24 46491 128584 26.55 175075 25 45410 129030 26.03 174440 26 45856 126815 26.56 172671 27 45750 130976 25.89 176726 28 47500 129133 26.89 176633 29 45815 133291 25.58 179106 30 44698 128880 25.75 173578 31 45531 127032 26.39 172563 32 44969 124029 26.61 168998 33 45178 124465 26.63 169643 34 46113 123676 27.16 169789 35 44721 123241 26.63 167962 36 44200 124480 26.20 168680 37 43156 122534 26.05 165690 38 42960 122232 26.01 165192 39 44121 124492 26.17 168613 40 43971 122692 26.38 166663 41 44273 123341 26.41 167614 42 44823 125183 26.37 170006 43 44110 123542 26.31 167652 44 43832 121565 26.50 165397 45 44446 121376 26.80 165822 46 44808 122591 26.77 167399 47 44158 120540 26.81 164698 48 43790 120918 26.59 164708 49 45003 120657 27.17 165660 50 43472 123170 26.09 166642 51 43683 122382 26.30 166065 52 43575 127341 25.49 170916 53 42833 120664 26.20 163497 54 42069 118890 26.14 160959 55 41531 115214 26.50 156745 56 41241 114251 26.52 155492 57 41710 115084 26.60 156794 58 41870 115550 26.60 157420 59 42171 114828 26.86 156999 60 40915 115264 26.20 156179 61 41433 113554 26.73 154987 62 40499 115059 26.03 155558 63 39986 113359 26.08 153345 64 40091 113765 26.06 153856 65 40005 111866 26.34 151871 66 40601 112416 26.53 153017 67 39995 110108 26.65 150103 68 39458 109928 26.41 149386 69 38386 107948 26.23 146334 70 38397 108500 26.14 146897 71 37713 108113 25.86 145826 72 37908 106975 26.16 144883 73 37399 105438 26.18 142837 74 36999 103838 26.27 140837 75 35797 103904 25.62 139701 76 36094 102669 26.01 138763 77 36726 101858 26.50 138584 78 36543 102560 26.27 139103 79 35761 101279 26.10 137040 80 35109 100810 25.83 135919 81 34788 99393 25.93 134181 82 34261 98643 25.78 132904 83 34502 99557 25.74 134059 84 34573 99973 25.70 134546 85 34221 98372 25.81 132593 86 33318 96959 25.57 130277 87 32761 95716 25.50 128477 88 33004 96809 25.42 129813 89 32267 94149 25.52 126416 90 32227 94204 25.49 126431 91 32026 92556 25.71 124582 92 31631 92790 25.42 124421 93 31411 92459 25.36 123870 94 31466 91515 25.59 122981 95 31361 90824 25.67 122185 96 31143 92773 25.13 123916 97 30013 88215 25.39 118228 98 27942 83196 25.14 111138 99 22150 65307 25.33 87457 100 28847 83704 25.63 112551 101 26059 81602 24.20 107661 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 230001 263180 46.64 493181 2 135739 227778 37.34 363517 3 50844 223895 18.51 274739 4 23348 237947 8.94 261295 5 13574 221347 5.78 234921 6 11934 211992 5.33 223926 7 8349 272497 2.97 280846 8 3361 297331 1.12 300692 9 2932 275641 1.05 278573 10 2763 260449 1.05 263212 11 2782 262543 1.05 265325 12 2962 261284 1.12 264246 13 2528 251585 0.99 254113 14 2260 250379 0.89 252639 15 2097 256070 0.81 258167 16 2053 255662 0.80 257715 17 1954 252229 0.77 254183 18 1813 250599 0.72 252412 19 1792 250003 0.71 251795 20 1939 262874 0.73 264813 21 1843 266892 0.69 268735 22 1937 263762 0.73 265699 23 2029 266326 0.76 268355 24 1909 266642 0.71 268551 25 1916 259781 0.73 261697 26 2032 261260 0.77 263292 27 1927 264906 0.72 266833 28 1910 262501 0.72 264411 29 1934 265518 0.72 267452 30 1833 267936 0.68 269769 31 1929 262011 0.73 263940 32 1987 263260 0.75 265247 33 1996 264682 0.75 266678 34 1967 260227 0.75 262194 35 2025 260841 0.77 262866 36 1951 260743 0.74 262694 37 1954 256281 0.76 258235 38 2032 260309 0.77 262341 39 2061 258194 0.79 260255 40 1911 256181 0.74 258092 41 2023 255753 0.78 257776 42 2079 257451 0.80 259530 43 1985 253711 0.78 255696 44 1988 257519 0.77 259507 45 2038 256025 0.79 258063 46 2046 253209 0.80 255255 47 2107 253700 0.82 255807 48 2113 257752 0.81 259865 49 2157 252555 0.85 254712 50 2228 252924 0.87 255152 51 2169 255044 0.84 257213 52 2144 253314 0.84 255458 53 2225 252453 0.87 254678 54 2253 252806 0.88 255059 55 2204 249279 0.88 251483 56 2367 252026 0.93 254393 57 2265 249152 0.90 251417 58 2530 247763 1.01 250293 59 2323 248987 0.92 251310 60 2368 250535 0.94 252903 61 2318 246884 0.93 249202 62 2465 249260 0.98 251725 63 2305 245924 0.93 248229 64 2282 245432 0.92 247714 65 2471 244606 1.00 247077 66 2366 240320 0.97 242686 67 2269 234504 0.96 236773 68 2461 236133 1.03 238594 69 2393 235953 1.00 238346 70 2273 232795 0.97 235068 71 2287 232465 0.97 234752 72 2338 231108 1.00 233446 73 2286 227729 0.99 230015 74 2408 226274 1.05 228682 75 2375 226651 1.04 229026 76 2164 221356 0.97 223520 77 2291 223694 1.01 225985 78 2179 219478 0.98 221657 79 2094 216344 0.96 218438 80 2119 214665 0.98 216784 81 2242 211757 1.05 213999 82 2169 210541 1.02 212710 83 2227 213988 1.03 216215 84 2119 213860 0.98 215979 85 2198 210632 1.03 212830 86 2135 212825 0.99 214960 87 2156 210455 1.01 212611 88 2096 206434 1.01 208530 89 2289 205721 1.10 208010 90 2275 205082 1.10 207357 91 2192 202112 1.07 204304 92 2362 204207 1.14 206569 93 2383 201536 1.17 203919 94 2171 198467 1.08 200638 95 2377 196292 1.20 198669 96 2335 195340 1.18 197675 97 2181 178980 1.20 181161 98 2038 163940 1.23 165978 99 1401 106916 1.29 108317 100 1515 107905 1.38 109420 101 3073 176136 1.71 179209 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 189125 286396 39.77 475521 2 84287 301045 21.87 385332 3 38433 400508 8.76 438941 4 31247 440721 6.62 471968 5 27136 529835 4.87 556971 6 21054 588325 3.45 609379 7 19302 759661 2.48 778963 8 10707 819569 1.29 830276 9 8279 748372 1.09 756651 10 8270 732012 1.12 740282 11 8653 732966 1.17 741619 12 7748 751706 1.02 759454 13 8283 766162 1.07 774445 14 8593 782708 1.09 791301 15 7731 800906 0.96 808637 16 7822 813787 0.95 821609 17 8524 816996 1.03 825520 18 8100 846872 0.95 854972 19 7731 864094 0.89 871825 20 8505 890175 0.95 898680 21 7970 889685 0.89 897655 22 8056 890487 0.90 898543 23 8683 890624 0.97 899307 24 7966 894175 0.88 902141 25 8195 899541 0.90 907736 26 8716 905858 0.95 914574 27 8061 908396 0.88 916457 28 7802 910175 0.85 917977 29 8725 906250 0.95 914975 30 7951 893798 0.88 901749 31 8021 880679 0.90 888700 32 8634 889007 0.96 897641 33 8002 884329 0.90 892331 34 8384 890811 0.93 899195 35 8670 882218 0.97 890888 36 7965 889643 0.89 897608 37 7848 882991 0.88 890839 38 8539 884113 0.96 892652 39 7959 878259 0.90 886218 40 8033 879675 0.90 887708 41 8779 882558 0.98 891337 42 8175 890638 0.91 898813 43 8226 876908 0.93 885134 44 8474 882214 0.95 890688 45 8052 874046 0.91 882098 46 8130 875668 0.92 883798 47 8554 870352 0.97 878906 48 7965 869101 0.91 877066 49 8091 856721 0.94 864812 50 8520 855349 0.99 863869 51 7849 845368 0.92 853217 52 8107 842106 0.95 850213 53 8461 835292 1.00 843753 54 7819 837049 0.93 844868 55 8057 838471 0.95 846528 56 8416 834067 1.00 842483 57 7835 847099 0.92 854934 58 9043 834516 1.07 843559 59 8656 845105 1.01 853761 60 7618 830223 0.91 837841 61 7911 826859 0.95 834770 62 8162 820688 0.98 828850 63 7833 810949 0.96 818782 64 8158 807331 1.00 815489 65 8391 806683 1.03 815074 66 7674 803428 0.95 811102 67 7859 798451 0.97 806310 68 8351 795570 1.04 803921 69 7558 791030 0.95 798588 70 7666 786192 0.97 793858 71 8221 780326 1.04 788547 72 7535 777493 0.96 785028 73 8029 768405 1.03 776434 74 7917 768164 1.02 776081 75 7446 762811 0.97 770257 76 7276 760832 0.95 768108 77 7809 755361 1.02 763170 78 6929 748677 0.92 755606 79 7227 746457 0.96 753684 80 7612 741872 1.02 749484 81 7215 733678 0.97 740893 82 7180 726418 0.98 733598 83 7774 727610 1.06 735384 84 7056 717385 0.97 724441 85 6879 710342 0.96 717221 86 7381 705499 1.04 712880 87 6890 702733 0.97 709623 88 6780 699308 0.96 706088 89 7199 692865 1.03 700064 90 6774 688898 0.97 695672 91 6912 683367 1.00 690279 92 7020 679195 1.02 686215 93 6625 674244 0.97 680869 94 6593 667296 0.98 673889 95 7175 658442 1.08 665617 96 6529 647259 1.00 653788 97 6520 629427 1.03 635947 98 6299 586145 1.06 592444 99 4257 403448 1.04 407705 100 4460 361859 1.22 366319 101 6732 590047 1.13 596779 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 94469 117787 44.51 212256 2 83877 104385 44.55 188262 3 91795 117101 43.94 208896 4 86478 132612 39.47 219090 5 38133 164236 18.84 202369 6 22284 87910 20.22 110194 7 20023 94264 17.52 114287 8 21367 87685 19.59 109052 9 18884 78204 19.45 97088 10 21388 86709 19.79 108097 11 22536 83967 21.16 106503 12 22064 80613 21.49 102677 13 22768 79140 22.34 101908 14 23943 79604 23.12 103547 15 22968 74341 23.60 97309 16 22270 72335 23.54 94605 17 26455 78987 25.09 105442 18 25901 76019 25.41 101920 19 24564 72289 25.36 96853 20 23226 70757 24.71 93983 21 24157 70556 25.51 94713 22 23973 70951 25.25 94924 23 22621 68585 24.80 91206 24 21228 65548 24.46 86776 25 23649 69956 25.26 93605 26 22089 66712 24.87 88801 27 23619 67145 26.02 90764 28 22014 64999 25.30 87013 29 22513 66868 25.19 89381 30 21721 62846 25.68 84567 31 20820 63173 24.79 83993 32 20393 59935 25.39 80328 33 22208 61007 26.69 83215 34 21331 62465 25.46 83796 35 25281 66632 27.51 91913 36 22118 60678 26.71 82796 37 21859 60958 26.39 82817 38 19815 59158 25.09 78973 39 20635 58656 26.02 79291 40 21918 59156 27.03 81074 41 20059 57188 25.97 77247 42 20195 58029 25.82 78224 43 20191 57077 26.13 77268 44 19339 56192 25.60 75531 45 22608 59777 27.44 82385 46 18927 52479 26.51 71406 47 18860 53322 26.13 72182 48 18732 52536 26.28 71268 49 18228 52673 25.71 70901 50 17207 50903 25.26 68110 51 17696 49531 26.32 67227 52 17642 50276 25.98 67918 53 17831 49538 26.47 67369 54 17441 49663 25.99 67104 55 17760 50461 26.03 68221 56 16746 47974 25.87 64720 57 17010 47664 26.30 64674 58 16764 47160 26.22 63924 59 16509 45401 26.67 61910 60 16686 46046 26.60 62732 61 14885 44331 25.14 59216 62 15205 44933 25.28 60138 63 16436 44057 27.17 60493 64 15578 42843 26.67 58421 65 14864 41550 26.35 56414 66 15750 42700 26.95 58450 67 14686 42471 25.69 57157 68 15601 43210 26.53 58811 69 14422 40442 26.29 54864 70 14082 40540 25.78 54622 71 14299 39083 26.79 53382 72 13729 39024 26.03 52753 73 13598 39107 25.80 52705 74 12727 37446 25.37 50173 75 12668 37039 25.49 49707 76 12958 36380 26.26 49338 77 12925 35753 26.55 48678 78 12801 36565 25.93 49366 79 12412 36007 25.63 48419 80 11907 35573 25.08 47480 81 11982 34972 25.52 46954 82 12190 34909 25.88 47099 83 12064 33927 26.23 45991 84 12748 35464 26.44 48212 85 11587 33822 25.52 45409 86 11478 33387 25.58 44865 87 11226 32249 25.82 43475 88 11300 32354 25.89 43654 89 11806 32706 26.52 44512 90 11729 31829 26.93 43558 91 11117 31493 26.09 42610 92 10704 30645 25.89 41349 93 10972 30577 26.41 41549 94 10904 30580 26.28 41484 95 10949 30128 26.65 41077 96 10643 29990 26.19 40633 97 11001 30786 26.33 41787 98 10070 27303 26.94 37373 99 9080 0 100.00 9080 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 30074 160310 15.80 190384 2 31230 161422 16.21 192652 3 28955 163438 15.05 192393 4 32163 169644 15.94 201807 5 2345 312425 0.74 314770 6 1773 376428 0.47 378201 7 1038 204613 0.50 205651 8 1056 217194 0.48 218250 9 985 187171 0.52 188156 10 1000 178623 0.56 179623 11 1239 226672 0.54 227911 12 1079 188780 0.57 189859 13 1051 186397 0.56 187448 14 1062 182203 0.58 183265 15 1024 171465 0.59 172489 16 942 162230 0.58 163172 17 1056 173539 0.60 174595 18 1100 155627 0.70 156727 19 986 152572 0.64 153558 20 939 151072 0.62 152011 21 1101 145838 0.75 146939 22 998 155350 0.64 156348 23 917 155264 0.59 156181 24 869 142305 0.61 143174 25 937 144910 0.64 145847 26 1009 149139 0.67 150148 27 907 140837 0.64 141744 28 880 134585 0.65 135465 29 876 141820 0.61 142696 30 866 140198 0.61 141064 31 828 133793 0.62 134621 32 934 135991 0.68 136925 33 888 153509 0.58 154397 34 768 132907 0.57 133675 35 872 136861 0.63 137733 36 773 136604 0.56 137377 37 773 126824 0.61 127597 38 784 130018 0.60 130802 39 807 123861 0.65 124668 40 840 122825 0.68 123665 41 769 120178 0.64 120947 42 784 114452 0.68 115236 43 737 115930 0.63 116667 44 742 117814 0.63 118556 45 707 110794 0.63 111501 46 706 111966 0.63 112672 47 695 114154 0.61 114849 48 735 110390 0.66 111125 49 705 111772 0.63 112477 50 754 109229 0.69 109983 51 687 103154 0.66 103841 52 713 102434 0.69 103147 53 713 113352 0.63 114065 54 681 105577 0.64 106258 55 695 102285 0.67 102980 56 680 104526 0.65 105206 57 750 99653 0.75 100403 58 626 96476 0.64 97102 59 638 99888 0.63 100526 60 666 96863 0.68 97529 61 611 96883 0.63 97494 62 673 96348 0.69 97021 63 668 96842 0.69 97510 64 599 91816 0.65 92415 65 641 94037 0.68 94678 66 577 89056 0.64 89633 67 611 93179 0.65 93790 68 615 91416 0.67 92031 69 555 91295 0.60 91850 70 563 90357 0.62 90920 71 595 90461 0.65 91056 72 579 85867 0.67 86446 73 548 84218 0.65 84766 74 582 87126 0.66 87708 75 560 84033 0.66 84593 76 466 80342 0.58 80808 77 533 83712 0.63 84245 78 527 79617 0.66 80144 79 516 79571 0.64 80087 80 534 78741 0.67 79275 81 472 75369 0.62 75841 82 468 74295 0.63 74763 83 512 75242 0.68 75754 84 497 72975 0.68 73472 85 457 77703 0.58 78160 86 494 72148 0.68 72642 87 443 71905 0.61 72348 88 423 69326 0.61 69749 89 488 71375 0.68 71863 90 494 70253 0.70 70747 91 455 71365 0.63 71820 92 465 69470 0.66 69935 93 474 66584 0.71 67058 94 480 66435 0.72 66915 95 459 67788 0.67 68247 96 460 64633 0.71 65093 97 438 63538 0.68 63976 98 346 61546 0.56 61892 99 261 0 100.00 261 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 40620 220775 15.54 261395 2 32757 181901 15.26 214658 3 34088 187670 15.37 221758 4 33934 183320 15.62 217254 5 3726 354812 1.04 358538 6 3739 490810 0.76 494549 7 4325 663070 0.65 667395 8 4438 654913 0.67 659351 9 4679 616547 0.75 621226 10 4563 634435 0.71 638998 11 4498 620444 0.72 624942 12 4624 580093 0.79 584717 13 4470 596718 0.74 601188 14 4300 598912 0.71 603212 15 4482 605149 0.74 609631 16 4161 579772 0.71 583933 17 4361 578659 0.75 583020 18 4417 576081 0.76 580498 19 4091 543147 0.75 547238 20 4100 562554 0.72 566654 21 4071 539713 0.75 543784 22 4058 525703 0.77 529761 23 3848 514815 0.74 518663 24 3864 498420 0.77 502284 25 4023 498085 0.80 502108 26 3722 495967 0.74 499689 27 4189 522338 0.80 526527 28 3739 502271 0.74 506010 29 3690 490984 0.75 494674 30 3793 479839 0.78 483632 31 3591 476465 0.75 480056 32 3498 466991 0.74 470489 33 3615 458928 0.78 462543 34 3576 453352 0.78 456928 35 4025 467187 0.85 471212 36 3747 460645 0.81 464392 37 3655 458957 0.79 462612 38 3661 476522 0.76 480183 39 3670 441889 0.82 445559 40 3493 457990 0.76 461483 41 3395 437681 0.77 441076 42 3432 444017 0.77 447449 43 3419 425954 0.80 429373 44 3297 424179 0.77 427476 45 3456 423721 0.81 427177 46 3244 429700 0.75 432944 47 3225 421701 0.76 424926 48 3391 413860 0.81 417251 49 3183 419162 0.75 422345 50 3169 413167 0.76 416336 51 3160 405106 0.77 408266 52 3000 386714 0.77 389714 53 2933 384051 0.76 386984 54 2943 376039 0.78 378982 55 2968 383945 0.77 386913 56 2806 375293 0.74 378099 57 2925 384240 0.76 387165 58 2784 373714 0.74 376498 59 2688 359805 0.74 362493 60 2905 372004 0.77 374909 61 2675 358150 0.74 360825 62 2776 354947 0.78 357723 63 2857 352421 0.80 355278 64 2523 342506 0.73 345029 65 2497 345848 0.72 348345 66 2597 334927 0.77 337524 67 2370 334608 0.70 336978 68 2567 342310 0.74 344877 69 2615 331831 0.78 334446 70 2462 323904 0.75 326366 71 2388 322131 0.74 324519 72 2437 318242 0.76 320679 73 2364 317331 0.74 319695 74 2278 317475 0.71 319753 75 2423 313468 0.77 315891 76 2254 303848 0.74 306102 77 2325 302390 0.76 304715 78 2315 301842 0.76 304157 79 2140 305138 0.70 307278 80 2207 294606 0.74 296813 81 2340 293589 0.79 295929 82 2188 290210 0.75 292398 83 2224 287309 0.77 289533 84 2217 285448 0.77 287665 85 2093 281528 0.74 283621 86 2112 281138 0.75 283250 87 2163 277054 0.77 279217 88 1993 271170 0.73 273163 89 2153 269595 0.79 271748 90 2025 267683 0.75 269708 91 1969 266813 0.73 268782 92 1970 263874 0.74 265844 93 1954 259207 0.75 261161 94 1965 254440 0.77 256405 95 1876 252891 0.74 254767 96 1901 247422 0.76 249323 97 1782 246570 0.72 248352 98 1456 232414 0.62 233870 99 1061 0 100.00 1061