CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 198638 365282 35.22 563920 2 180605 383079 32.04 563684 3 163122 330968 33.01 494090 4 162194 246185 39.72 408379 5 153867 204578 42.93 358445 6 153058 174916 46.67 327974 7 169185 166644 50.38 335829 8 80736 189386 29.89 270122 9 73387 172329 29.87 245716 10 73731 164885 30.90 238616 11 76445 166810 31.43 243255 12 73965 173242 29.92 247207 13 72697 178968 28.89 251665 14 68521 175901 28.03 244422 15 66398 177332 27.24 243730 16 61760 173954 26.20 235714 17 58469 168566 25.75 227035 18 59585 170940 25.85 230525 19 59086 174153 25.33 233239 20 60346 175503 25.59 235849 21 60892 177299 25.56 238191 22 59140 175360 25.22 234500 23 58605 174003 25.19 232608 24 57521 173900 24.86 231421 25 56290 172469 24.61 228759 26 56417 169297 24.99 225714 27 56730 175279 24.45 232009 28 58046 172412 25.19 230458 29 56426 178479 24.02 234905 30 55532 174426 24.15 229958 31 56656 169768 25.02 226424 32 55548 166234 25.05 221782 33 55585 166975 24.98 222560 34 57274 165845 25.67 223119 35 55300 165600 25.03 220900 36 54874 166923 24.74 221797 37 53799 163897 24.71 217696 38 53161 164603 24.41 217764 39 55055 166791 24.82 221846 40 55295 164618 25.14 219913 41 55131 165006 25.04 220137 42 56443 166890 25.27 223333 43 55078 165132 25.01 220210 44 54774 162826 25.17 217600 45 54453 162587 25.09 217040 46 56037 163881 25.48 219918 47 55325 161709 25.49 217034 48 54784 161500 25.33 216284 49 55298 160881 25.58 216179 50 53347 164584 24.48 217931 51 53958 162357 24.94 216315 52 54506 169077 24.38 223583 53 52994 159627 24.92 212621 54 51558 157586 24.65 209144 55 51086 152548 25.09 203634 56 50768 150318 25.25 201086 57 51664 152310 25.33 203974 58 51322 151560 25.30 202882 59 51531 150809 25.47 202340 60 49690 150960 24.76 200650 61 50387 148491 25.34 198878 62 49315 150294 24.71 199609 63 48665 147894 24.76 196559 64 48152 147291 24.64 195443 65 48777 144950 25.18 193727 66 48942 144822 25.26 193764 67 48298 142758 25.28 191056 68 47601 142288 25.07 189889 69 47211 140299 25.18 187510 70 46817 139564 25.12 186381 71 46096 138236 25.01 184332 72 45395 137762 24.78 183157 73 45157 135382 25.01 180539 74 44729 133410 25.11 178139 75 43404 132490 24.68 175894 76 43160 130803 24.81 173963 77 43788 130394 25.14 174182 78 43545 130179 25.07 173724 79 42674 127409 25.09 170083 80 41500 127581 24.54 169081 81 41525 126196 24.76 167721 82 40106 125014 24.29 165120 83 40880 125262 24.61 166142 84 40636 124767 24.57 165403 85 40468 123510 24.68 163978 86 39101 120961 24.43 160062 87 38399 119892 24.26 158291 88 38450 120277 24.22 158727 89 37747 117935 24.25 155682 90 37889 118203 24.27 156092 91 37729 115552 24.61 153281 92 36701 115343 24.14 152044 93 36608 115406 24.08 152014 94 36458 113235 24.36 149693 95 35965 112471 24.23 148436 96 36209 114741 23.99 150950 97 34545 109652 23.96 144197 98 32003 102525 23.79 134528 99 25379 80787 23.91 106166 100 33028 103181 24.25 136209 101 30548 100986 23.22 131534 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 298551 354285 45.73 652836 2 177339 312995 36.17 490334 3 71317 304463 18.98 375780 4 30633 315376 8.85 346009 5 17387 293469 5.59 310856 6 13870 288607 4.59 302477 7 10189 358174 2.77 368363 8 4207 383271 1.09 387478 9 3585 356250 1.00 359835 10 3500 341508 1.01 345008 11 3682 343109 1.06 346791 12 3578 344254 1.03 347832 13 3058 328488 0.92 331546 14 2825 325866 0.86 328691 15 2767 334337 0.82 337104 16 2418 333197 0.72 335615 17 2368 328658 0.72 331026 18 2399 328348 0.73 330747 19 2304 327555 0.70 329859 20 2430 341814 0.71 344244 21 2255 348575 0.64 350830 22 2345 343917 0.68 346262 23 2422 348904 0.69 351326 24 2298 350249 0.65 352547 25 2330 340846 0.68 343176 26 2534 343164 0.73 345698 27 2384 345685 0.68 348069 28 2407 344479 0.69 346886 29 2493 348140 0.71 350633 30 2457 352418 0.69 354875 31 2473 344418 0.71 346891 32 2462 346234 0.71 348696 33 2619 346219 0.75 348838 34 2475 341402 0.72 343877 35 2620 343635 0.76 346255 36 2561 343311 0.74 345872 37 2618 335890 0.77 338508 38 2654 339727 0.78 342381 39 2617 337642 0.77 340259 40 2680 335173 0.79 337853 41 2716 335187 0.80 337903 42 2642 335808 0.78 338450 43 2678 332603 0.80 335281 44 2706 335923 0.80 338629 45 2735 335434 0.81 338169 46 2799 329992 0.84 332791 47 2852 331206 0.85 334058 48 2837 334844 0.84 337681 49 2806 328475 0.85 331281 50 2901 329205 0.87 332106 51 2908 330841 0.87 333749 52 2990 327816 0.90 330806 53 2983 324942 0.91 327925 54 3011 326143 0.91 329154 55 3039 321353 0.94 324392 56 2933 324062 0.90 326995 57 3061 321355 0.94 324416 58 3357 318052 1.04 321409 59 3106 318299 0.97 321405 60 3006 320572 0.93 323578 61 3028 317757 0.94 320785 62 3226 318381 1.00 321607 63 3143 312561 1.00 315704 64 3098 314280 0.98 317378 65 3123 310297 1.00 313420 66 3168 304978 1.03 308146 67 3115 297763 1.04 300878 68 3170 299476 1.05 302646 69 3197 298831 1.06 302028 70 3099 293110 1.05 296209 71 3093 292739 1.05 295832 72 3056 289553 1.04 292609 73 3058 285316 1.06 288374 74 3087 283805 1.08 286892 75 2969 283741 1.04 286710 76 2875 276495 1.03 279370 77 2887 277098 1.03 279985 78 3028 272363 1.10 275391 79 2837 270069 1.04 272906 80 2809 266740 1.04 269549 81 2767 263611 1.04 266378 82 2811 260576 1.07 263387 83 2815 262281 1.06 265096 84 2861 262379 1.08 265240 85 2805 258291 1.07 261096 86 2876 261144 1.09 264020 87 2751 258514 1.05 261265 88 2804 253124 1.10 255928 89 2767 252470 1.08 255237 90 2819 251316 1.11 254135 91 2765 247506 1.10 250271 92 2952 247400 1.18 250352 93 2938 245224 1.18 248162 94 2917 239689 1.20 242606 95 2926 237846 1.22 240772 96 2923 235923 1.22 238846 97 2759 215886 1.26 218645 98 2424 197081 1.22 199505 99 1679 128583 1.29 130262 100 1739 129964 1.32 131703 101 3900 213103 1.80 217003 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 256688 398690 39.17 655378 2 113025 417922 21.29 530947 3 47762 535224 8.19 582986 4 36480 592633 5.80 629113 5 30990 709674 4.18 740664 6 24332 784844 3.01 809176 7 22681 985510 2.25 1008191 8 12407 1060429 1.16 1072836 9 10058 969310 1.03 979368 10 9590 950486 1.00 960076 11 10300 949460 1.07 959760 12 9302 965399 0.95 974701 13 9871 982584 0.99 992455 14 10145 1006199 1.00 1016344 15 9359 1029460 0.90 1038819 16 9122 1053005 0.86 1062127 17 9866 1055408 0.93 1065274 18 9035 1094436 0.82 1103471 19 9197 1118790 0.82 1127987 20 9981 1150794 0.86 1160775 21 9139 1157075 0.78 1166214 22 9601 1159198 0.82 1168799 23 10074 1161005 0.86 1171079 24 9320 1164452 0.79 1173772 25 9699 1174011 0.82 1183710 26 10106 1182365 0.85 1192471 27 9507 1185682 0.80 1195189 28 9272 1182906 0.78 1192178 29 9893 1179145 0.83 1189038 30 9300 1167947 0.79 1177247 31 9331 1150263 0.80 1159594 32 10049 1158125 0.86 1168174 33 9243 1151204 0.80 1160447 34 9863 1158992 0.84 1168855 35 10198 1148580 0.88 1158778 36 9604 1156094 0.82 1165698 37 8949 1148769 0.77 1157718 38 10028 1149711 0.86 1159739 39 9252 1140403 0.80 1149655 40 9513 1143309 0.83 1152822 41 10042 1147366 0.87 1157408 42 9662 1156076 0.83 1165738 43 9927 1137866 0.86 1147793 44 10010 1141645 0.87 1151655 45 9466 1129284 0.83 1138750 46 9468 1131345 0.83 1140813 47 10114 1122206 0.89 1132320 48 9583 1121206 0.85 1130789 49 9653 1103128 0.87 1112781 50 9990 1097785 0.90 1107775 51 9171 1084192 0.84 1093363 52 9530 1079553 0.88 1089083 53 9869 1069303 0.91 1079172 54 9224 1067678 0.86 1076902 55 9534 1070084 0.88 1079618 56 9785 1062666 0.91 1072451 57 9222 1074013 0.85 1083235 58 10445 1059262 0.98 1069707 59 9942 1069257 0.92 1079199 60 9090 1049961 0.86 1059051 61 9307 1044056 0.88 1053363 62 9633 1032511 0.92 1042144 63 9272 1019679 0.90 1028951 64 9206 1012780 0.90 1021986 65 9655 1010000 0.95 1019655 66 9063 1001426 0.90 1010489 67 9021 996294 0.90 1005315 68 9387 990116 0.94 999503 69 8658 984567 0.87 993225 70 8649 977954 0.88 986603 71 9351 968184 0.96 977535 72 8782 962692 0.90 971474 73 9004 949976 0.94 958980 74 8996 948197 0.94 957193 75 8640 941275 0.91 949915 76 8467 934886 0.90 943353 77 8953 927380 0.96 936333 78 8205 918756 0.89 926961 79 8152 913109 0.88 921261 80 8719 903835 0.96 912554 81 8148 892907 0.90 901055 82 8229 883180 0.92 891409 83 8359 884342 0.94 892701 84 7859 872805 0.89 880664 85 7895 863436 0.91 871331 86 8149 853518 0.95 861667 87 7802 851782 0.91 859584 88 7629 847259 0.89 854888 89 8005 836566 0.95 844571 90 7610 829725 0.91 837335 91 7557 820160 0.91 827717 92 7858 819094 0.95 826952 93 7491 810154 0.92 817645 94 7433 798888 0.92 806321 95 7789 789615 0.98 797404 96 7411 774483 0.95 781894 97 7059 751614 0.93 758673 98 7004 697860 0.99 704864 99 4747 481017 0.98 485764 100 4896 430155 1.13 435051 101 7417 700572 1.05 707989 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 106696 140973 43.08 247669 2 94765 127113 42.71 221878 3 103889 142384 42.18 246273 4 98219 160165 38.01 258384 5 41943 198209 17.47 240152 6 24918 107352 18.84 132270 7 22300 115112 16.23 137412 8 23918 106836 18.29 130754 9 21478 95461 18.37 116939 10 23746 104882 18.46 128628 11 25267 101398 19.95 126665 12 24933 98281 20.24 123214 13 25094 95073 20.88 120167 14 26266 96334 21.42 122600 15 25425 89737 22.08 115162 16 24949 87330 22.22 112279 17 29574 95396 23.66 124970 18 28861 90693 24.14 119554 19 26972 87337 23.60 114309 20 25619 85290 23.10 110909 21 27103 84389 24.31 111492 22 26104 85099 23.47 111203 23 25032 82629 23.25 107661 24 23894 78389 23.36 102283 25 26098 83220 23.87 109318 26 24249 79564 23.36 103813 27 25932 80395 24.39 106327 28 24574 77675 24.03 102249 29 25217 80352 23.89 105569 30 24034 74928 24.29 98962 31 22989 75691 23.30 98680 32 22477 71069 24.03 93546 33 24265 72711 25.02 96976 34 23539 74246 24.07 97785 35 27854 78029 26.31 105883 36 24126 71702 25.18 95828 37 23813 73653 24.43 97466 38 22009 71001 23.66 93010 39 22631 69508 24.56 92139 40 23663 71134 24.96 94797 41 21840 67931 24.33 89771 42 22065 68135 24.46 90200 43 22058 68609 24.33 90667 44 20919 66436 23.95 87355 45 24835 70509 26.05 95344 46 20317 62542 24.52 82859 47 20549 63068 24.58 83617 48 20329 62631 24.50 82960 49 19986 62635 24.19 82621 50 19068 60481 23.97 79549 51 19178 59050 24.52 78228 52 19207 60344 24.14 79551 53 19529 57997 25.19 77526 54 18896 58640 24.37 77536 55 18910 58941 24.29 77851 56 18094 57164 24.04 75258 57 18410 56514 24.57 74924 58 18482 55967 24.83 74449 59 17885 53696 24.99 71581 60 18126 54754 24.87 72880 61 16390 52440 23.81 68830 62 16343 52659 23.68 69002 63 17620 52301 25.20 69921 64 16800 51149 24.72 67949 65 16184 49138 24.78 65322 66 17153 50075 25.51 67228 67 15806 49985 24.02 65791 68 16746 50845 24.78 67591 69 15456 47171 24.68 62627 70 15032 47483 24.05 62515 71 15729 45640 25.63 61369 72 14952 45627 24.68 60579 73 15048 46478 24.46 61526 74 13745 44072 23.77 57817 75 13709 43619 23.91 57328 76 13943 42810 24.57 56753 77 13826 43181 24.25 57007 78 14046 43354 24.47 57400 79 13358 42432 23.94 55790 80 13030 41838 23.75 54868 81 13119 40900 24.29 54019 82 12989 40952 24.08 53941 83 13006 40135 24.47 53141 84 13913 41775 24.98 55688 85 12576 39847 23.99 52423 86 12231 39201 23.78 51432 87 12090 38113 24.08 50203 88 12219 37520 24.57 49739 89 12664 38266 24.87 50930 90 12583 37080 25.34 49663 91 12045 36584 24.77 48629 92 11379 36117 23.96 47496 93 11708 35844 24.62 47552 94 11647 35988 24.45 47635 95 11530 35268 24.64 46798 96 11476 35393 24.49 46869 97 11848 36234 24.64 48082 98 11129 32356 25.59 43485 99 9643 0 100.00 9643 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 35380 190494 15.66 225874 2 36416 192606 15.90 229022 3 34263 195638 14.90 229901 4 37228 202195 15.55 239423 5 2596 370733 0.70 373329 6 1939 444580 0.43 446519 7 1268 242815 0.52 244083 8 1255 257524 0.48 258779 9 1052 221731 0.47 222783 10 1083 211491 0.51 212574 11 1456 265991 0.54 267447 12 1169 220282 0.53 221451 13 1188 220610 0.54 221798 14 1165 214705 0.54 215870 15 1140 201754 0.56 202894 16 1025 191825 0.53 192850 17 1290 203639 0.63 204929 18 1178 183481 0.64 184659 19 1091 178911 0.61 180002 20 1069 177907 0.60 178976 21 1246 171873 0.72 173119 22 1099 183717 0.59 184816 23 1163 181915 0.64 183078 24 952 166240 0.57 167192 25 1002 169035 0.59 170037 26 1086 174304 0.62 175390 27 977 164968 0.59 165945 28 950 157311 0.60 158261 29 988 165137 0.59 166125 30 975 163565 0.59 164540 31 970 155615 0.62 156585 32 922 159157 0.58 160079 33 958 177278 0.54 178236 34 857 155097 0.55 155954 35 984 157813 0.62 158797 36 877 157590 0.55 158467 37 814 146827 0.55 147641 38 852 150994 0.56 151846 39 880 144458 0.61 145338 40 852 142461 0.59 143313 41 820 139878 0.58 140698 42 811 133508 0.60 134319 43 821 134350 0.61 135171 44 847 136073 0.62 136920 45 782 129183 0.60 129965 46 710 129993 0.54 130703 47 867 132730 0.65 133597 48 820 127266 0.64 128086 49 796 128282 0.62 129078 50 738 126063 0.58 126801 51 730 120073 0.60 120803 52 694 119495 0.58 120189 53 841 132565 0.63 133406 54 775 122064 0.63 122839 55 731 118367 0.61 119098 56 720 120793 0.59 121513 57 696 114363 0.60 115059 58 737 111691 0.66 112428 59 668 115749 0.57 116417 60 713 111477 0.64 112190 61 691 111633 0.62 112324 62 692 111781 0.62 112473 63 728 112001 0.65 112729 64 621 106041 0.58 106662 65 664 108781 0.61 109445 66 619 102257 0.60 102876 67 684 107844 0.63 108528 68 604 104337 0.58 104941 69 671 105390 0.63 106061 70 674 103161 0.65 103835 71 660 104335 0.63 104995 72 599 98524 0.60 99123 73 602 97115 0.62 97717 74 591 100773 0.58 101364 75 565 97082 0.58 97647 76 486 92373 0.52 92859 77 590 96556 0.61 97146 78 575 91111 0.63 91686 79 534 91431 0.58 91965 80 536 89436 0.60 89972 81 543 86383 0.62 86926 82 548 85388 0.64 85936 83 555 86936 0.63 87491 84 498 84092 0.59 84590 85 526 88552 0.59 89078 86 496 83469 0.59 83965 87 494 82501 0.60 82995 88 478 78871 0.60 79349 89 533 82477 0.64 83010 90 573 80477 0.71 81050 91 484 81518 0.59 82002 92 525 79306 0.66 79831 93 457 76653 0.59 77110 94 467 75567 0.61 76034 95 509 77863 0.65 78372 96 468 73564 0.63 74032 97 451 72842 0.62 73293 98 410 70542 0.58 70952 99 302 0 100.00 302 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 47888 265719 15.27 313607 2 38549 220509 14.88 259058 3 39543 226577 14.86 266120 4 39385 220537 15.15 259922 5 3922 418846 0.93 422768 6 3743 585595 0.64 589338 7 4470 784420 0.57 788890 8 4635 776710 0.59 781345 9 4728 730533 0.64 735261 10 4586 750571 0.61 755157 11 4600 733134 0.62 737734 12 4654 683574 0.68 688228 13 4718 701086 0.67 705804 14 4592 706510 0.65 711102 15 4747 712281 0.66 717028 16 4442 679665 0.65 684107 17 4481 677776 0.66 682257 18 4575 675286 0.67 679861 19 4239 635841 0.66 640080 20 4400 658039 0.66 662439 21 4359 630893 0.69 635252 22 4194 615598 0.68 619792 23 4050 603531 0.67 607581 24 3935 581129 0.67 585064 25 4022 581209 0.69 585231 26 4055 579358 0.70 583413 27 4287 607747 0.70 612034 28 3886 583210 0.66 587096 29 3835 571613 0.67 575448 30 3922 557426 0.70 561348 31 3637 552617 0.65 556254 32 3662 540377 0.67 544039 33 3732 532983 0.70 536715 34 3687 525662 0.70 529349 35 4168 542105 0.76 546273 36 3874 531639 0.72 535513 37 3859 530449 0.72 534308 38 3819 547952 0.69 551771 39 3634 510550 0.71 514184 40 3595 525917 0.68 529512 41 3459 504691 0.68 508150 42 3545 509503 0.69 513048 43 3580 491754 0.72 495334 44 3485 487296 0.71 490781 45 3592 488623 0.73 492215 46 3280 493812 0.66 497092 47 3314 484547 0.68 487861 48 3467 475399 0.72 478866 49 3300 478554 0.68 481854 50 3154 472710 0.66 475864 51 3142 461742 0.68 464884 52 3047 442133 0.68 445180 53 2977 441236 0.67 444213 54 2854 432063 0.66 434917 55 3124 440914 0.70 444038 56 2872 429623 0.66 432495 57 2969 437853 0.67 440822 58 2953 425800 0.69 428753 59 2811 412608 0.68 415419 60 2910 423745 0.68 426655 61 2779 407471 0.68 410250 62 2734 405208 0.67 407942 63 2771 402805 0.68 405576 64 2539 391565 0.64 394104 65 2676 393657 0.68 396333 66 2703 380910 0.70 383613 67 2479 378399 0.65 380878 68 2632 389170 0.67 391802 69 2628 380023 0.69 382651 70 2503 368465 0.67 370968 71 2548 367886 0.69 370434 72 2551 361439 0.70 363990 73 2453 360286 0.68 362739 74 2442 359862 0.67 362304 75 2443 357199 0.68 359642 76 2239 346714 0.64 348953 77 2454 341954 0.71 344408 78 2319 343966 0.67 346285 79 2292 346540 0.66 348832 80 2233 335135 0.66 337368 81 2378 332254 0.71 334632 82 2238 330559 0.67 332797 83 2262 326618 0.69 328880 84 2308 323845 0.71 326153 85 2170 319389 0.67 321559 86 2248 319302 0.70 321550 87 2234 314558 0.71 316792 88 1997 306700 0.65 308697 89 2184 305298 0.71 307482 90 2157 303520 0.71 305677 91 2060 301682 0.68 303742 92 1996 298421 0.66 300417 93 1988 294035 0.67 296023 94 1995 289884 0.68 291879 95 2024 286979 0.70 289003 96 1938 279318 0.69 281256 97 1867 279046 0.66 280913 98 1483 263731 0.56 265214 99 1229 0 100.00 1229