/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-135_S35_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-135_S35_L005_R2_001_val_2.fq.gz
Data processed at 05:39 on 2019-12-21
Alignment Stats
Sequence pairs analysed in total
28731808
Paired-end alignments with a unique best hit
12720631
Pairs without alignments under any condition
13210078
Pairs that did not map uniquely
2801099
Genomic sequence context not extractable (edges of chromosomes)
1
Cytosine Methylation
Total C's analysed
379885177
Methylated C's in CpG context
14174074
Methylated C's in CHG context
2097825
Methylated C's in CHH context
3204273
Methylated C's in Unknown context
64166
Unmethylated C's in CpG context
39497431
Unmethylated C's in CHG context
77915331
Unmethylated C's in CHH context
242996243
Unmethylated C's in Unknown context
785379
Percentage methylation (CpG context)
26.4%
Percentage methylation (CHG context)
2.6%
Percentage methylation (CHH context)
1.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
6307893
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
6412737
original bottom strand
Deduplication
Alignments analysed
12720630
Unique alignments
10559504
Duplicates removed
2161126
Duplicated alignments were found at 1085821 different positions