/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-119_S31_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-119_S31_L005_R2_001_val_2.fq.gz
Data processed at 05:39 on 2019-12-21
Alignment Stats
Sequence pairs analysed in total
28905983
Paired-end alignments with a unique best hit
12331889
Pairs without alignments under any condition
14292877
Pairs that did not map uniquely
2281217
Genomic sequence context not extractable (edges of chromosomes)
3
Cytosine Methylation
Total C's analysed
389840146
Methylated C's in CpG context
12477704
Methylated C's in CHG context
1827358
Methylated C's in CHH context
3035063
Methylated C's in Unknown context
49011
Unmethylated C's in CpG context
45041606
Unmethylated C's in CHG context
80081549
Unmethylated C's in CHH context
247376866
Unmethylated C's in Unknown context
795814
Percentage methylation (CpG context)
21.7%
Percentage methylation (CHG context)
2.2%
Percentage methylation (CHH context)
1.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
6078960
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
6252926
original bottom strand
Deduplication
Alignments analysed
12331886
Unique alignments
10413822
Duplicates removed
1918064
Duplicated alignments were found at 946129 different positions