EPI-111_S29_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 10466822 lines in total Total number of methylation call strings processed: 20933644 Final Cytosine Methylation Report ================================= Total number of C's analysed: 231214858 Total methylated C's in CpG context: 8681437 Total methylated C's in CHG context: 1156157 Total methylated C's in CHH context: 1936920 Total C to T conversions in CpG context: 22978618 Total C to T conversions in CHG context: 46067897 Total C to T conversions in CHH context: 150393829 C methylated in CpG context: 27.4% C methylated in CHG context: 2.4% C methylated in CHH context: 1.3%