CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 217058 364857 37.30 581915 2 199369 391329 33.75 590698 3 176975 335557 34.53 512532 4 174863 245337 41.61 420200 5 166897 204050 44.99 370947 6 165503 173522 48.82 339025 7 182115 167338 52.11 349453 8 85948 190471 31.09 276419 9 76577 173736 30.59 250313 10 77556 164756 32.01 242312 11 80309 169158 32.19 249467 12 77916 173560 30.98 251476 13 76303 179367 29.84 255670 14 72088 175908 29.07 247996 15 69778 179102 28.04 248880 16 63849 174812 26.75 238661 17 60353 169859 26.22 230212 18 61711 170913 26.53 232624 19 61049 175375 25.82 236424 20 62207 175499 26.17 237706 21 62539 177892 26.01 240431 22 60524 175220 25.67 235744 23 60832 174438 25.86 235270 24 59601 173623 25.56 233224 25 57918 172196 25.17 230114 26 58076 169067 25.57 227143 27 58235 175230 24.94 233465 28 60061 171816 25.90 231877 29 58183 179147 24.52 237330 30 57402 173306 24.88 230708 31 58511 170018 25.60 228529 32 56678 166700 25.37 223378 33 57351 167326 25.53 224677 34 58624 166474 26.04 225098 35 56532 165344 25.48 221876 36 56571 166497 25.36 223068 37 54912 164004 25.08 218916 38 55116 164159 25.14 219275 39 56618 166302 25.40 222920 40 56747 163808 25.73 220555 41 56856 164020 25.74 220876 42 57200 166488 25.57 223688 43 56560 164818 25.55 221378 44 56395 163682 25.63 220077 45 56788 162592 25.89 219380 46 57781 163620 26.10 221401 47 57032 160648 26.20 217680 48 56530 161969 25.87 218499 49 57442 160657 26.34 218099 50 55395 165082 25.13 220477 51 55911 163106 25.53 219017 52 56377 169636 24.94 226013 53 54451 160927 25.28 215378 54 54085 158829 25.40 212914 55 53084 153338 25.72 206422 56 52805 151646 25.83 204451 57 53188 153670 25.71 206858 58 53230 153037 25.81 206267 59 53453 151989 26.02 205442 60 51806 153106 25.28 204912 61 52270 150404 25.79 202674 62 51888 153617 25.25 205505 63 50946 150635 25.27 201581 64 50710 150495 25.20 201205 65 51299 147612 25.79 198911 66 51674 148174 25.86 199848 67 50675 144950 25.90 195625 68 49616 144368 25.58 193984 69 49520 143095 25.71 192615 70 49212 142922 25.61 192134 71 48265 141902 25.38 190167 72 47982 140725 25.43 188707 73 47777 138715 25.62 186492 74 46815 136955 25.47 183770 75 45822 136571 25.12 182393 76 45645 134907 25.28 180552 77 46372 134153 25.69 180525 78 46408 134461 25.66 180869 79 45370 132798 25.46 178168 80 44568 132438 25.18 177006 81 43996 131297 25.10 175293 82 43128 129682 24.96 172810 83 43512 130241 25.04 173753 84 43680 130139 25.13 173819 85 43086 128447 25.12 171533 86 42143 126167 25.04 168310 87 40975 125154 24.66 166129 88 41097 125086 24.73 166183 89 40634 123460 24.76 164094 90 40316 123128 24.67 163444 91 40438 120660 25.10 161098 92 39580 119634 24.86 159214 93 39204 119795 24.66 158999 94 39051 118417 24.80 157468 95 38543 117673 24.67 156216 96 38904 120190 24.45 159094 97 37343 115034 24.51 152377 98 34764 107604 24.42 142368 99 27028 83994 24.34 111022 100 35641 108057 24.80 143698 101 33053 105620 23.84 138673 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 323326 348497 48.13 671823 2 190133 310636 37.97 500769 3 74527 303680 19.71 378207 4 32112 315717 9.23 347829 5 18548 293709 5.94 312257 6 15701 288683 5.16 304384 7 11133 359962 3.00 371095 8 4342 389416 1.10 393758 9 3563 359680 0.98 363243 10 3559 343027 1.03 346586 11 3656 345676 1.05 349332 12 3749 345399 1.07 349148 13 3184 329989 0.96 333173 14 2960 329136 0.89 332096 15 2807 336460 0.83 339267 16 2536 336744 0.75 339280 17 2410 332128 0.72 334538 18 2334 330799 0.70 333133 19 2338 330721 0.70 333059 20 2380 345696 0.68 348076 21 2374 351739 0.67 354113 22 2323 349141 0.66 351464 23 2356 352455 0.66 354811 24 2312 352802 0.65 355114 25 2275 342451 0.66 344726 26 2447 346830 0.70 349277 27 2408 349446 0.68 351854 28 2263 348092 0.65 350355 29 2438 350785 0.69 353223 30 2412 353678 0.68 356090 31 2315 348901 0.66 351216 32 2381 348219 0.68 350600 33 2531 349614 0.72 352145 34 2340 344002 0.68 346342 35 2480 346411 0.71 348891 36 2452 345175 0.71 347627 37 2415 338277 0.71 340692 38 2523 343470 0.73 345993 39 2575 340180 0.75 342755 40 2489 338533 0.73 341022 41 2594 337515 0.76 340109 42 2447 339292 0.72 341739 43 2559 334763 0.76 337322 44 2565 340310 0.75 342875 45 2651 338741 0.78 341392 46 2546 333624 0.76 336170 47 2565 335142 0.76 337707 48 2662 338952 0.78 341614 49 2522 333798 0.75 336320 50 2843 332825 0.85 335668 51 2762 334414 0.82 337176 52 2789 333527 0.83 336316 53 2791 331642 0.83 334433 54 2768 332963 0.82 335731 55 2763 328599 0.83 331362 56 2908 331122 0.87 334030 57 2844 328425 0.86 331269 58 3184 325303 0.97 328487 59 2801 326407 0.85 329208 60 2828 327568 0.86 330396 61 2821 326086 0.86 328907 62 2933 326868 0.89 329801 63 2978 322288 0.92 325266 64 2881 323356 0.88 326237 65 3119 319107 0.97 322226 66 3057 314331 0.96 317388 67 2921 306603 0.94 309524 68 3042 310557 0.97 313599 69 3000 309393 0.96 312393 70 2836 304345 0.92 307181 71 3032 301875 0.99 304907 72 3011 301565 0.99 304576 73 2798 296542 0.93 299340 74 2885 294240 0.97 297125 75 2946 295151 0.99 298097 76 2881 288705 0.99 291586 77 2843 289168 0.97 292011 78 2734 285717 0.95 288451 79 2737 281210 0.96 283947 80 2787 278907 0.99 281694 81 2812 276413 1.01 279225 82 2755 272671 1.00 275426 83 2796 276723 1.00 279519 84 2913 275472 1.05 278385 85 2780 270913 1.02 273693 86 2805 274666 1.01 277471 87 2849 272112 1.04 274961 88 2847 267189 1.05 270036 89 2913 265131 1.09 268044 90 2818 265155 1.05 267973 91 2863 260018 1.09 262881 92 2990 261887 1.13 264877 93 3103 257883 1.19 260986 94 2821 253873 1.10 256694 95 2998 251719 1.18 254717 96 2992 250321 1.18 253313 97 2845 228605 1.23 231450 98 2546 209319 1.20 211865 99 1689 134997 1.24 136686 100 1915 137263 1.38 139178 101 4038 225550 1.76 229588 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 269353 387488 41.01 656841 2 118619 410255 22.43 528874 3 50224 532858 8.61 583082 4 37850 580042 6.13 617892 5 33160 697699 4.54 730859 6 25757 770897 3.23 796654 7 23911 979552 2.38 1003463 8 13104 1055698 1.23 1068802 9 10206 966128 1.05 976334 10 9983 946728 1.04 956711 11 10560 945297 1.10 955857 12 9690 965380 0.99 975070 13 10094 985327 1.01 995421 14 10474 1012938 1.02 1023412 15 9480 1041296 0.90 1050776 16 9489 1065083 0.88 1074572 17 10044 1069769 0.93 1079813 18 9286 1111228 0.83 1120514 19 9337 1136655 0.81 1145992 20 10169 1171252 0.86 1181421 21 9377 1175072 0.79 1184449 22 9833 1180671 0.83 1190504 23 10250 1181597 0.86 1191847 24 9565 1183733 0.80 1193298 25 9767 1196000 0.81 1205767 26 10093 1204175 0.83 1214268 27 9785 1207528 0.80 1217313 28 9448 1205162 0.78 1214610 29 10364 1198584 0.86 1208948 30 9381 1188550 0.78 1197931 31 9439 1170931 0.80 1180370 32 10216 1179312 0.86 1189528 33 9411 1171141 0.80 1180552 34 9906 1179190 0.83 1189096 35 10182 1168090 0.86 1178272 36 9711 1178100 0.82 1187811 37 9321 1166967 0.79 1176288 38 10266 1173201 0.87 1183467 39 9513 1166743 0.81 1176256 40 9646 1168610 0.82 1178256 41 10354 1171290 0.88 1181644 42 9829 1182616 0.82 1192445 43 9983 1165089 0.85 1175072 44 10332 1172721 0.87 1183053 45 9652 1156392 0.83 1166044 46 9740 1160548 0.83 1170288 47 10219 1149930 0.88 1160149 48 9617 1150725 0.83 1160342 49 9702 1134894 0.85 1144596 50 9942 1128837 0.87 1138779 51 9239 1117098 0.82 1126337 52 9619 1112302 0.86 1121921 53 10093 1102275 0.91 1112368 54 9354 1103609 0.84 1112963 55 9578 1105330 0.86 1114908 56 10003 1099622 0.90 1109625 57 9351 1114653 0.83 1124004 58 10776 1098179 0.97 1108955 59 10109 1111025 0.90 1121134 60 9367 1094498 0.85 1103865 61 9499 1088919 0.86 1098418 62 9832 1077995 0.90 1087827 63 9316 1065543 0.87 1074859 64 9540 1058335 0.89 1067875 65 10054 1059019 0.94 1069073 66 9298 1051521 0.88 1060819 67 9380 1048704 0.89 1058084 68 9953 1041481 0.95 1051434 69 9083 1031246 0.87 1040329 70 9096 1029133 0.88 1038229 71 9681 1021222 0.94 1030903 72 8973 1018817 0.87 1027790 73 9180 1004860 0.91 1014040 74 9497 1003066 0.94 1012563 75 8884 998603 0.88 1007487 76 8799 991039 0.88 999838 77 9542 984163 0.96 993705 78 8414 976090 0.85 984504 79 8639 970311 0.88 978950 80 8981 962956 0.92 971937 81 8420 950832 0.88 959252 82 8766 942178 0.92 950944 83 9011 943102 0.95 952113 84 8388 931945 0.89 940333 85 8298 920933 0.89 929231 86 8719 911422 0.95 920141 87 8242 910834 0.90 919076 88 8175 904402 0.90 912577 89 8635 896359 0.95 904994 90 8102 888971 0.90 897073 91 8010 878428 0.90 886438 92 8300 878579 0.94 886879 93 7900 866883 0.90 874783 94 7959 858270 0.92 866229 95 8234 846909 0.96 855143 96 7738 828838 0.92 836576 97 7568 808061 0.93 815629 98 7458 750384 0.98 757842 99 5123 516106 0.98 521229 100 5322 460874 1.14 466196 101 7999 756073 1.05 764072 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 113592 147517 43.50 261109 2 101229 133391 43.15 234620 3 111529 150902 42.50 262431 4 105849 168782 38.54 274631 5 45755 207365 18.08 253120 6 26419 111463 19.16 137882 7 24109 120450 16.68 144559 8 25633 111681 18.67 137314 9 22986 100997 18.54 123983 10 25793 110223 18.96 136016 11 27691 106720 20.60 134411 12 26843 102903 20.69 129746 13 27148 101204 21.15 128352 14 28828 101552 22.11 130380 15 27940 94721 22.78 122661 16 26754 92305 22.47 119059 17 31769 101007 23.93 132776 18 30885 95686 24.40 126571 19 29492 91213 24.43 120705 20 28085 90442 23.70 118527 21 29215 88970 24.72 118185 22 28442 89980 24.02 118422 23 27272 86551 23.96 113823 24 25854 82659 23.83 108513 25 28400 87779 24.45 116179 26 25936 83539 23.69 109475 27 28305 84551 25.08 112856 28 26918 81768 24.77 108686 29 26955 84643 24.15 111598 30 26155 78254 25.05 104409 31 24555 79059 23.70 103614 32 24071 74047 24.53 98118 33 26217 75833 25.69 102050 34 25349 77486 24.65 102835 35 29926 81198 26.93 111124 36 25912 75252 25.61 101164 37 26188 77054 25.37 103242 38 23845 73252 24.56 97097 39 24518 72502 25.27 97020 40 25688 73549 25.89 99237 41 23574 70199 25.14 93773 42 23819 71730 24.93 95549 43 24028 71229 25.22 95257 44 22474 69338 24.48 91812 45 26524 71954 26.93 98478 46 22089 65018 25.36 87107 47 22339 64872 25.61 87211 48 21787 64861 25.14 86648 49 21233 64911 24.65 86144 50 20573 62591 24.74 83164 51 20401 61230 24.99 81631 52 20419 62410 24.65 82829 53 21122 59923 26.06 81045 54 20331 60919 25.02 81250 55 20185 61435 24.73 81620 56 19031 59015 24.38 78046 57 19547 57901 25.24 77448 58 19328 57627 25.12 76955 59 19090 55564 25.57 74654 60 19238 55937 25.59 75175 61 17362 53853 24.38 71215 62 17312 54423 24.13 71735 63 18717 53057 26.08 71774 64 18103 53040 25.45 71143 65 17008 50320 25.26 67328 66 18062 51763 25.87 69825 67 16816 51037 24.78 67853 68 17562 51630 25.38 69192 69 16285 48436 25.16 64721 70 15951 48634 24.70 64585 71 16508 46808 26.07 63316 72 15717 46645 25.20 62362 73 15878 47468 25.07 63346 74 14487 45214 24.27 59701 75 14654 44419 24.81 59073 76 14762 44238 25.02 59000 77 14522 44007 24.81 58529 78 14662 43961 25.01 58623 79 13892 43254 24.31 57146 80 13624 42682 24.20 56306 81 13554 41791 24.49 55345 82 13762 41522 24.89 55284 83 13713 40604 25.25 54317 84 14204 42539 25.03 56743 85 13034 40488 24.35 53522 86 12870 39727 24.47 52597 87 13033 38591 25.25 51624 88 12549 38192 24.73 50741 89 13153 38646 25.39 51799 90 13214 37789 25.91 51003 91 12536 37467 25.07 50003 92 12116 36366 24.99 48482 93 12120 36473 24.94 48593 94 12150 36383 25.03 48533 95 11983 35891 25.03 47874 96 11980 35704 25.12 47684 97 12450 36158 25.61 48608 98 11221 32975 25.39 44196 99 9955 0 100.00 9955 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 36742 204739 15.22 241481 2 38643 207630 15.69 246273 3 36535 210627 14.78 247162 4 39427 216136 15.43 255563 5 2717 395767 0.68 398484 6 2016 472155 0.43 474171 7 1209 255822 0.47 257031 8 1284 271231 0.47 272515 9 1101 235338 0.47 236439 10 1117 224128 0.50 225245 11 1423 278760 0.51 280183 12 1212 234705 0.51 235917 13 1229 233059 0.52 234288 14 1226 228559 0.53 229785 15 1231 215063 0.57 216294 16 1075 203513 0.53 204588 17 1294 215782 0.60 217076 18 1267 193751 0.65 195018 19 1169 190460 0.61 191629 20 1138 188573 0.60 189711 21 1269 183670 0.69 184939 22 1201 194076 0.62 195277 23 1206 192107 0.62 193313 24 1057 176962 0.59 178019 25 1047 179902 0.58 180949 26 1030 184531 0.56 185561 27 1050 175304 0.60 176354 28 947 166496 0.57 167443 29 1004 174625 0.57 175629 30 1010 173805 0.58 174815 31 983 165890 0.59 166873 32 914 167212 0.54 168126 33 1050 184589 0.57 185639 34 959 163609 0.58 164568 35 1004 166972 0.60 167976 36 969 165569 0.58 166538 37 898 154287 0.58 155185 38 966 158801 0.60 159767 39 882 152128 0.58 153010 40 851 150005 0.56 150856 41 829 146791 0.56 147620 42 871 139243 0.62 140114 43 910 141064 0.64 141974 44 834 143654 0.58 144488 45 792 135638 0.58 136430 46 792 135995 0.58 136787 47 856 139733 0.61 140589 48 907 133265 0.68 134172 49 805 135864 0.59 136669 50 760 132334 0.57 133094 51 811 125669 0.64 126480 52 827 125247 0.66 126074 53 788 138576 0.57 139364 54 738 127162 0.58 127900 55 749 124948 0.60 125697 56 784 126743 0.61 127527 57 749 119578 0.62 120327 58 714 115920 0.61 116634 59 703 121155 0.58 121858 60 704 117086 0.60 117790 61 708 117485 0.60 118193 62 688 115912 0.59 116600 63 785 116042 0.67 116827 64 694 110900 0.62 111594 65 691 112879 0.61 113570 66 673 106632 0.63 107305 67 706 111827 0.63 112533 68 640 108504 0.59 109144 69 650 109095 0.59 109745 70 630 106879 0.59 107509 71 651 108019 0.60 108670 72 593 102474 0.58 103067 73 588 100788 0.58 101376 74 589 104397 0.56 104986 75 603 99854 0.60 100457 76 520 95852 0.54 96372 77 580 99553 0.58 100133 78 544 94058 0.58 94602 79 536 94601 0.56 95137 80 546 92402 0.59 92948 81 506 89537 0.56 90043 82 535 87949 0.60 88484 83 557 88509 0.63 89066 84 583 86079 0.67 86662 85 506 90468 0.56 90974 86 430 85722 0.50 86152 87 513 84655 0.60 85168 88 505 81496 0.62 82001 89 534 84519 0.63 85053 90 559 82288 0.67 82847 91 459 83366 0.55 83825 92 468 80958 0.57 81426 93 491 78366 0.62 78857 94 460 77765 0.59 78225 95 509 79088 0.64 79597 96 457 75873 0.60 76330 97 497 74311 0.66 74808 98 333 72010 0.46 72343 99 236 0 100.00 236 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 51752 292904 15.02 344656 2 41900 244184 14.65 286084 3 43220 250980 14.69 294200 4 42415 242440 14.89 284855 5 4472 456444 0.97 460916 6 4073 630842 0.64 634915 7 4854 843871 0.57 848725 8 5076 835948 0.60 841024 9 5088 790000 0.64 795088 10 4990 807979 0.61 812969 11 5079 787877 0.64 792956 12 5091 736656 0.69 741747 13 4959 757343 0.65 762302 14 4806 758253 0.63 763059 15 4924 763119 0.64 768043 16 4669 729008 0.64 733677 17 5128 726220 0.70 731348 18 4916 722885 0.68 727801 19 4604 683685 0.67 688289 20 4665 705667 0.66 710332 21 4698 678431 0.69 683129 22 4513 661137 0.68 665650 23 4351 646927 0.67 651278 24 4239 622411 0.68 626650 25 4475 623974 0.71 628449 26 4283 619647 0.69 623930 27 4615 646450 0.71 651065 28 4263 625321 0.68 629584 29 4249 612846 0.69 617095 30 4188 598637 0.69 602825 31 3977 592505 0.67 596482 32 3861 581727 0.66 585588 33 3940 569801 0.69 573741 34 4006 563493 0.71 567499 35 4546 577364 0.78 581910 36 4059 567254 0.71 571313 37 3852 567157 0.67 571009 38 4043 582334 0.69 586377 39 4058 545438 0.74 549496 40 3810 559222 0.68 563032 41 3855 538787 0.71 542642 42 3801 541176 0.70 544977 43 3737 523301 0.71 527038 44 3619 520741 0.69 524360 45 3751 521214 0.71 524965 46 3587 526680 0.68 530267 47 3462 516343 0.67 519805 48 3588 505541 0.70 509129 49 3427 508019 0.67 511446 50 3505 502689 0.69 506194 51 3460 492221 0.70 495681 52 3279 469543 0.69 472822 53 3360 468560 0.71 471920 54 3071 458595 0.67 461666 55 3274 465465 0.70 468739 56 3136 456703 0.68 459839 57 3242 463590 0.69 466832 58 3128 451442 0.69 454570 59 2948 436483 0.67 439431 60 3068 447453 0.68 450521 61 2926 432424 0.67 435350 62 2927 430742 0.67 433669 63 2870 426291 0.67 429161 64 2830 413580 0.68 416410 65 2745 415163 0.66 417908 66 2844 404425 0.70 407269 67 2651 400949 0.66 403600 68 2824 410403 0.68 413227 69 2719 398763 0.68 401482 70 2614 387894 0.67 390508 71 2684 385349 0.69 388033 72 2603 381420 0.68 384023 73 2552 379297 0.67 381849 74 2417 379159 0.63 381576 75 2556 375083 0.68 377639 76 2488 364837 0.68 367325 77 2490 358649 0.69 361139 78 2479 360803 0.68 363282 79 2343 363477 0.64 365820 80 2427 351969 0.68 354396 81 2456 348591 0.70 351047 82 2387 345862 0.69 348249 83 2315 340543 0.68 342858 84 2377 337871 0.70 340248 85 2289 333842 0.68 336131 86 2138 332327 0.64 334465 87 2308 327854 0.70 330162 88 2157 320090 0.67 322247 89 2234 318502 0.70 320736 90 2230 316224 0.70 318454 91 2157 315392 0.68 317549 92 2152 311199 0.69 313351 93 2089 306086 0.68 308175 94 2009 300937 0.66 302946 95 1956 299387 0.65 301343 96 1841 291492 0.63 293333 97 1869 290012 0.64 291881 98 1582 274048 0.57 275630 99 1249 0 100.00 1249