CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 237049 358228 39.82 595277 2 220774 387322 36.31 608096 3 203496 334070 37.86 537566 4 207909 251453 45.26 459362 5 199964 211374 48.61 411338 6 197911 179685 52.41 377596 7 214702 173580 55.30 388282 8 101086 198207 33.77 299293 9 90633 182546 33.18 273179 10 91796 174349 34.49 266145 11 95858 178353 34.96 274211 12 92418 183470 33.50 275888 13 89954 187409 32.43 277363 14 84568 186314 31.22 270882 15 81814 187631 30.36 269445 16 74925 183420 29.00 258345 17 70495 178536 28.31 249031 18 71718 180973 28.38 252691 19 71146 183989 27.89 255135 20 71931 186072 27.88 258003 21 72323 187947 27.79 260270 22 71094 184403 27.83 255497 23 70307 184144 27.63 254451 24 68974 182333 27.45 251307 25 67595 181637 27.12 249232 26 67385 179059 27.34 246444 27 67888 183187 27.04 251075 28 69647 181933 27.68 251580 29 67524 186510 26.58 254034 30 67286 182753 26.91 250039 31 68216 179429 27.55 247645 32 67471 175472 27.77 242943 33 67377 176043 27.68 243420 34 68385 176390 27.94 244775 35 66428 173393 27.70 239821 36 66178 176002 27.33 242180 37 64484 172437 27.22 236921 38 63723 173171 26.90 236894 39 65698 175055 27.29 240753 40 66142 173221 27.63 239363 41 65610 173393 27.45 239003 42 66680 175512 27.53 242192 43 66028 174168 27.49 240196 44 65447 172297 27.53 237744 45 66236 171517 27.86 237753 46 66518 173346 27.73 239864 47 66374 169538 28.14 235912 48 65909 170399 27.89 236308 49 66802 170134 28.19 236936 50 64815 174164 27.12 238979 51 65154 172412 27.43 237566 52 65163 178327 26.76 243490 53 63464 168569 27.35 232033 54 62818 167128 27.32 229946 55 62231 162684 27.67 224915 56 61823 160856 27.76 222679 57 61913 162974 27.53 224887 58 61943 162443 27.61 224386 59 62321 161730 27.82 224051 60 61297 163089 27.32 224386 61 61585 160202 27.77 221787 62 60313 162777 27.04 223090 63 59578 160512 27.07 220090 64 59386 159417 27.14 218803 65 59582 157501 27.45 217083 66 60083 157713 27.59 217796 67 59439 154401 27.80 213840 68 58277 154658 27.37 212935 69 57497 152858 27.33 210355 70 57469 152760 27.34 210229 71 56566 151802 27.15 208368 72 56209 150640 27.17 206849 73 55661 149337 27.15 204998 74 55120 147015 27.27 202135 75 53701 146214 26.86 199915 76 53742 144604 27.10 198346 77 54225 143717 27.39 197942 78 54498 144018 27.45 198516 79 53230 142483 27.20 195713 80 51882 142094 26.75 193976 81 51283 140811 26.70 192094 82 50842 138653 26.83 189495 83 51448 140075 26.86 191523 84 50804 139327 26.72 190131 85 50780 138573 26.82 189353 86 49814 135523 26.88 185337 87 48336 133684 26.56 182020 88 48762 134652 26.59 183414 89 47648 132089 26.51 179737 90 47950 132495 26.57 180445 91 47099 130394 26.54 177493 92 45831 129778 26.10 175609 93 46065 129578 26.23 175643 94 46495 128088 26.63 174583 95 45128 126556 26.29 171684 96 45723 128871 26.19 174594 97 43580 123679 26.06 167259 98 41512 115644 26.41 157156 99 32145 90366 26.24 122511 100 42393 115909 26.78 158302 101 38953 114057 25.46 153010 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 332318 381594 46.55 713912 2 192194 344388 35.82 536582 3 77147 337513 18.60 414660 4 34585 349960 8.99 384545 5 20562 323946 5.97 344508 6 16650 314689 5.03 331339 7 12665 394331 3.11 406996 8 5262 425781 1.22 431043 9 4298 395842 1.07 400140 10 4435 378570 1.16 383005 11 4471 381872 1.16 386343 12 4426 379603 1.15 384029 13 3874 365544 1.05 369418 14 3527 364785 0.96 368312 15 3391 372784 0.90 376175 16 3028 374062 0.80 377090 17 2947 369013 0.79 371960 18 2804 368855 0.75 371659 19 2754 367534 0.74 370288 20 2817 383907 0.73 386724 21 2732 390229 0.70 392961 22 2808 387283 0.72 390091 23 2890 391856 0.73 394746 24 2785 392614 0.70 395399 25 2749 384736 0.71 387485 26 3029 386673 0.78 389702 27 2773 388741 0.71 391514 28 2609 386937 0.67 389546 29 2882 390249 0.73 393131 30 2731 394988 0.69 397719 31 2779 386498 0.71 389277 32 2825 387648 0.72 390473 33 3017 388907 0.77 391924 34 2879 383677 0.74 386556 35 3071 385690 0.79 388761 36 2815 385163 0.73 387978 37 2876 376452 0.76 379328 38 3113 382715 0.81 385828 39 2986 380199 0.78 383185 40 2958 375732 0.78 378690 41 3002 375981 0.79 378983 42 2979 377918 0.78 380897 43 3054 373822 0.81 376876 44 3038 377417 0.80 380455 45 3027 378625 0.79 381652 46 3061 374505 0.81 377566 47 3000 373646 0.80 376646 48 3052 380066 0.80 383118 49 3123 372846 0.83 375969 50 3164 371930 0.84 375094 51 3233 373577 0.86 376810 52 3249 372310 0.87 375559 53 3190 370085 0.85 373275 54 3261 373557 0.87 376818 55 3317 367156 0.90 370473 56 3339 369470 0.90 372809 57 3176 368173 0.86 371349 58 3524 362177 0.96 365701 59 3336 365524 0.90 368860 60 3374 365734 0.91 369108 61 3311 362453 0.91 365764 62 3482 365878 0.94 369360 63 3435 360645 0.94 364080 64 3364 360396 0.92 363760 65 3572 358591 0.99 362163 66 3534 352655 0.99 356189 67 3284 343921 0.95 347205 68 3530 346501 1.01 350031 69 3428 345982 0.98 349410 70 3403 342317 0.98 345720 71 3473 339623 1.01 343096 72 3364 338360 0.98 341724 73 3413 333996 1.01 337409 74 3459 332543 1.03 336002 75 3378 332417 1.01 335795 76 3170 323937 0.97 327107 77 3443 325845 1.05 329288 78 3298 321260 1.02 324558 79 3299 316650 1.03 319949 80 3284 314342 1.03 317626 81 3246 312449 1.03 315695 82 3233 307626 1.04 310859 83 3269 311367 1.04 314636 84 3352 311870 1.06 315222 85 3335 306057 1.08 309392 86 3357 307741 1.08 311098 87 3302 307504 1.06 310806 88 3280 301640 1.08 304920 89 3348 299823 1.10 303171 90 3276 299690 1.08 302966 91 3352 295159 1.12 298511 92 3320 295974 1.11 299294 93 3593 292830 1.21 296423 94 3486 286818 1.20 290304 95 3493 285607 1.21 289100 96 3623 283364 1.26 286987 97 3381 258603 1.29 261984 98 2987 236800 1.25 239787 99 1975 153303 1.27 155278 100 2147 155351 1.36 157498 101 4757 257243 1.82 262000 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 301139 444532 40.38 745671 2 134647 465996 22.42 600643 3 60101 586805 9.29 646906 4 46964 634887 6.89 681851 5 41027 762519 5.11 803546 6 32307 835596 3.72 867903 7 29603 1070772 2.69 1100375 8 16190 1149884 1.39 1166074 9 12576 1062406 1.17 1074982 10 12491 1038955 1.19 1051446 11 13407 1037319 1.28 1050726 12 11819 1060054 1.10 1071873 13 12686 1085095 1.16 1097781 14 12756 1116312 1.13 1129068 15 11577 1148942 1.00 1160519 16 11472 1175944 0.97 1187416 17 12594 1185302 1.05 1197896 18 11209 1230339 0.90 1241548 19 11276 1256830 0.89 1268106 20 12498 1299441 0.95 1311939 21 11318 1303958 0.86 1315276 22 11882 1307850 0.90 1319732 23 12835 1311152 0.97 1323987 24 11563 1314313 0.87 1325876 25 11907 1322972 0.89 1334879 26 12803 1330100 0.95 1342903 27 11533 1332543 0.86 1344076 28 11481 1333400 0.85 1344881 29 12793 1329938 0.95 1342731 30 11459 1316115 0.86 1327574 31 11974 1296061 0.92 1308035 32 12545 1305506 0.95 1318051 33 11505 1298321 0.88 1309826 34 12054 1306577 0.91 1318631 35 12806 1293626 0.98 1306432 36 11668 1303038 0.89 1314706 37 11470 1293658 0.88 1305128 38 12475 1297434 0.95 1309909 39 11588 1289287 0.89 1300875 40 11670 1288745 0.90 1300415 41 12854 1296856 0.98 1309710 42 11824 1305749 0.90 1317573 43 12013 1289484 0.92 1301497 44 12590 1293274 0.96 1305864 45 11777 1282845 0.91 1294622 46 11793 1285231 0.91 1297024 47 12583 1273725 0.98 1286308 48 11290 1272455 0.88 1283745 49 11765 1257394 0.93 1269159 50 12495 1250758 0.99 1263253 51 11107 1239831 0.89 1250938 52 11642 1235316 0.93 1246958 53 12385 1226110 1.00 1238495 54 11465 1226823 0.93 1238288 55 11742 1226196 0.95 1237938 56 12465 1222712 1.01 1235177 57 11327 1233973 0.91 1245300 58 12750 1221871 1.03 1234621 59 12627 1235199 1.01 1247826 60 11260 1217221 0.92 1228481 61 11628 1212763 0.95 1224391 62 12188 1203751 1.00 1215939 63 11195 1190680 0.93 1201875 64 11826 1185577 0.99 1197403 65 12066 1185234 1.01 1197300 66 10921 1176694 0.92 1187615 67 11333 1171347 0.96 1182680 68 12102 1166935 1.03 1179037 69 11030 1159261 0.94 1170291 70 11179 1152439 0.96 1163618 71 11997 1146051 1.04 1158048 72 11144 1141699 0.97 1152843 73 11540 1126136 1.01 1137676 74 11732 1126121 1.03 1137853 75 10833 1118946 0.96 1129779 76 10855 1113320 0.97 1124175 77 11560 1103955 1.04 1115515 78 10512 1098161 0.95 1108673 79 10536 1090875 0.96 1101411 80 11131 1082238 1.02 1093369 81 10279 1072426 0.95 1082705 82 10643 1059470 0.99 1070113 83 11127 1061383 1.04 1072510 84 10255 1047544 0.97 1057799 85 10187 1038134 0.97 1048321 86 10768 1028572 1.04 1039340 87 10116 1023404 0.98 1033520 88 10004 1019101 0.97 1029105 89 10643 1008550 1.04 1019193 90 9746 1000287 0.96 1010033 91 9899 989460 0.99 999359 92 10413 985103 1.05 995516 93 9671 977041 0.98 986712 94 9970 964625 1.02 974595 95 10390 955399 1.08 965789 96 9462 936319 1.00 945781 97 9474 910328 1.03 919802 98 9358 845714 1.09 855072 99 6140 580299 1.05 586439 100 6467 518060 1.23 524527 101 9760 853006 1.13 862766 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 129840 155519 45.50 285359 2 116543 141561 45.15 258104 3 129921 160030 44.81 289951 4 122635 180692 40.43 303327 5 55007 223046 19.78 278053 6 30875 120343 20.42 151218 7 28563 128775 18.15 157338 8 30304 120182 20.14 150486 9 27690 109024 20.25 136714 10 30378 118149 20.45 148527 11 32778 113953 22.34 146731 12 31872 109918 22.48 141790 13 32088 107770 22.94 139858 14 34296 108630 24.00 142926 15 32975 101154 24.58 134129 16 31866 97984 24.54 129850 17 37428 107206 25.88 144634 18 36555 102354 26.32 138909 19 34808 98514 26.11 133322 20 33117 96337 25.58 129454 21 34929 95121 26.86 130050 22 33660 95943 25.97 129603 23 32025 92790 25.66 124815 24 30482 88005 25.73 118487 25 33287 93151 26.33 126438 26 30724 88859 25.69 119583 27 33348 90320 26.97 123668 28 31266 87341 26.36 118607 29 31899 89670 26.24 121569 30 30570 83513 26.80 114083 31 28844 83688 25.63 112532 32 28479 79366 26.41 107845 33 30965 80682 27.73 111647 34 29996 82300 26.71 112296 35 34827 86302 28.75 121129 36 30781 79378 27.94 110159 37 30727 81545 27.37 112272 38 27711 78632 26.06 106343 39 28978 77318 27.26 106296 40 29841 77890 27.70 107731 41 27969 74986 27.17 102955 42 27903 75699 26.93 103602 43 28295 75019 27.39 103314 44 26140 72973 26.37 99113 45 30377 77070 28.27 107447 46 25644 68754 27.17 94398 47 26721 69026 27.91 95747 48 25665 68381 27.29 94046 49 25292 68062 27.09 93354 50 24230 65482 27.01 89712 51 24121 64464 27.23 88585 52 24179 65321 27.02 89500 53 24884 64038 27.98 88922 54 23540 63370 27.09 86910 55 23551 63768 26.97 87319 56 22574 62076 26.67 84650 57 22943 61002 27.33 83945 58 22758 60650 27.29 83408 59 22108 57941 27.62 80049 60 22924 58670 28.10 81594 61 20460 57026 26.40 77486 62 20310 57104 26.24 77414 63 21452 56026 27.69 77478 64 20388 55722 26.79 76110 65 19758 52855 27.21 72613 66 20920 54435 27.76 75355 67 19565 53667 26.72 73232 68 20551 54232 27.48 74783 69 18770 50375 27.15 69145 70 18530 51076 26.62 69606 71 18954 49337 27.75 68291 72 18258 49023 27.14 67281 73 17965 49903 26.47 67868 74 17088 47016 26.66 64104 75 17004 46716 26.69 63720 76 17222 45748 27.35 62970 77 16827 45972 26.80 62799 78 16726 46282 26.55 63008 79 16052 44716 26.42 60768 80 15705 44337 26.16 60042 81 15777 43389 26.67 59166 82 15928 43513 26.80 59441 83 15556 42068 27.00 57624 84 16620 43591 27.60 60211 85 15397 41887 26.88 57284 86 14708 41077 26.37 55785 87 14843 40064 27.03 54907 88 14512 40227 26.51 54739 89 15364 39954 27.77 55318 90 15126 39429 27.73 54555 91 14408 38622 27.17 53030 92 13734 38165 26.46 51899 93 14064 37548 27.25 51612 94 13784 37437 26.91 51221 95 13992 37393 27.23 51385 96 13857 36932 27.28 50789 97 14451 37632 27.75 52083 98 12855 33950 27.47 46805 99 11471 0 100.00 11471 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 41800 230413 15.36 272213 2 43821 236051 15.66 279872 3 42390 238411 15.10 280801 4 44739 245471 15.42 290210 5 3311 449174 0.73 452485 6 2508 534303 0.47 536811 7 1428 288823 0.49 290251 8 1554 306794 0.50 308348 9 1326 266900 0.49 268226 10 1325 252983 0.52 254308 11 1795 313104 0.57 314899 12 1472 264711 0.55 266183 13 1481 262020 0.56 263501 14 1504 257224 0.58 258728 15 1471 242694 0.60 244165 16 1329 228590 0.58 229919 17 1500 243417 0.61 244917 18 1502 218719 0.68 220221 19 1425 214225 0.66 215650 20 1287 213292 0.60 214579 21 1449 206633 0.70 208082 22 1484 219060 0.67 220544 23 1343 216557 0.62 217900 24 1183 197533 0.60 198716 25 1293 201214 0.64 202507 26 1283 207787 0.61 209070 27 1300 196017 0.66 197317 28 1182 186805 0.63 187987 29 1276 196561 0.64 197837 30 1218 194388 0.62 195606 31 1180 185635 0.63 186815 32 1163 187240 0.62 188403 33 1225 207532 0.59 208757 34 1205 182232 0.66 183437 35 1216 186714 0.65 187930 36 1173 184938 0.63 186111 37 1048 172030 0.61 173078 38 1120 176245 0.63 177365 39 1041 169037 0.61 170078 40 1110 166696 0.66 167806 41 1064 164026 0.64 165090 42 1075 156300 0.68 157375 43 1031 157951 0.65 158982 44 1023 159910 0.64 160933 45 999 151052 0.66 152051 46 998 151702 0.65 152700 47 971 155564 0.62 156535 48 1069 149391 0.71 150460 49 946 150486 0.62 151432 50 968 146838 0.65 147806 51 909 140039 0.64 140948 52 916 138760 0.66 139676 53 965 152689 0.63 153654 54 898 141450 0.63 142348 55 946 137153 0.69 138099 56 841 139850 0.60 140691 57 911 132203 0.68 133114 58 856 128294 0.66 129150 59 829 133926 0.62 134755 60 867 129414 0.67 130281 61 852 129133 0.66 129985 62 871 128954 0.67 129825 63 953 127492 0.74 128445 64 781 122599 0.63 123380 65 770 124249 0.62 125019 66 792 118151 0.67 118943 67 774 122931 0.63 123705 68 781 119770 0.65 120551 69 767 119921 0.64 120688 70 751 117799 0.63 118550 71 760 118522 0.64 119282 72 654 112311 0.58 112965 73 690 110554 0.62 111244 74 708 113911 0.62 114619 75 645 110553 0.58 111198 76 650 104262 0.62 104912 77 687 109118 0.63 109805 78 617 103080 0.60 103697 79 677 102909 0.65 103586 80 644 101026 0.63 101670 81 609 97383 0.62 97992 82 623 96008 0.64 96631 83 658 97252 0.67 97910 84 556 94356 0.59 94912 85 592 99123 0.59 99715 86 612 92998 0.65 93610 87 562 92214 0.61 92776 88 566 89013 0.63 89579 89 658 92809 0.70 93467 90 629 89233 0.70 89862 91 583 91279 0.63 91862 92 550 88304 0.62 88854 93 550 85273 0.64 85823 94 608 84438 0.71 85046 95 632 86654 0.72 87286 96 600 82063 0.73 82663 97 572 80463 0.71 81035 98 443 78261 0.56 78704 99 333 0 100.00 333 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 60110 335529 15.19 395639 2 48324 279657 14.73 327981 3 49933 284609 14.93 334542 4 48696 275077 15.04 323773 5 5481 517447 1.05 522928 6 4976 712375 0.69 717351 7 6153 950964 0.64 957117 8 6436 941052 0.68 947488 9 6334 889788 0.71 896122 10 6409 910069 0.70 916478 11 6421 889250 0.72 895671 12 6252 831424 0.75 837676 13 6205 852481 0.72 858686 14 6285 853168 0.73 859453 15 6311 859369 0.73 865680 16 5891 820096 0.71 825987 17 6208 815889 0.76 822097 18 6300 812340 0.77 818640 19 5766 765344 0.75 771110 20 5889 789844 0.74 795733 21 5722 758896 0.75 764618 22 5571 740371 0.75 745942 23 5507 723964 0.75 729471 24 5361 697497 0.76 702858 25 5414 698923 0.77 704337 26 5222 694094 0.75 699316 27 5659 726530 0.77 732189 28 5293 697472 0.75 702765 29 5182 684393 0.75 689575 30 5158 670491 0.76 675649 31 4972 662286 0.75 667258 32 4854 648381 0.74 653235 33 4985 636467 0.78 641452 34 4852 628895 0.77 633747 35 5449 644444 0.84 649893 36 4999 634565 0.78 639564 37 4941 631671 0.78 636612 38 4983 650414 0.76 655397 39 4790 605312 0.79 610102 40 4698 623463 0.75 628161 41 4653 598664 0.77 603317 42 4622 603134 0.76 607756 43 4633 582529 0.79 587162 44 4564 579287 0.78 583851 45 4522 580658 0.77 585180 46 4500 584116 0.76 588616 47 4334 571655 0.75 575989 48 4420 559309 0.78 563729 49 4299 563103 0.76 567402 50 4091 556658 0.73 560749 51 4138 547028 0.75 551166 52 3938 520543 0.75 524481 53 3982 518699 0.76 522681 54 3697 508236 0.72 511933 55 3962 515224 0.76 519186 56 3860 503654 0.76 507514 57 3832 511602 0.74 515434 58 3682 497262 0.74 500944 59 3743 481778 0.77 485521 60 3769 495560 0.75 499329 61 3625 476652 0.75 480277 62 3516 473225 0.74 476741 63 3529 468984 0.75 472513 64 3464 455377 0.75 458841 65 3448 457283 0.75 460731 66 3489 442170 0.78 445659 67 3289 441194 0.74 444483 68 3435 451954 0.75 455389 69 3306 437882 0.75 441188 70 3183 426038 0.74 429221 71 3269 424831 0.76 428100 72 3198 418304 0.76 421502 73 3128 417336 0.74 420464 74 3033 416833 0.72 419866 75 3039 411110 0.73 414149 76 3035 397953 0.76 400988 77 3009 393870 0.76 396879 78 2948 393982 0.74 396930 79 2957 397680 0.74 400637 80 2864 383620 0.74 386484 81 2936 381100 0.76 384036 82 2851 376978 0.75 379829 83 2803 372146 0.75 374949 84 2842 368355 0.77 371197 85 2744 364190 0.75 366934 86 2660 362877 0.73 365537 87 2738 356218 0.76 358956 88 2597 348948 0.74 351545 89 2692 347470 0.77 350162 90 2705 342986 0.78 345691 91 2645 340990 0.77 343635 92 2434 338926 0.71 341360 93 2476 332912 0.74 335388 94 2509 325808 0.76 328317 95 2448 325274 0.75 327722 96 2365 317295 0.74 319660 97 2297 314311 0.73 316608 98 1875 298437 0.62 300312 99 1419 0 100.00 1419