File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated chgs	Unmethylated chgs	Methylated CHHs	Unmethylated CHHs
EPI-103_S27_L005_R1_001_val_1_bismark_bt2_pe.bam	100000	626	99374	0	0	15	611	18654	49	5272	153	5187	58	7935
EPI-104_S28_L005_R1_001_val_1_bismark_bt2_pe.bam	100000	512	99488	0	0	15	497	14389	50	4077	129	3941	54	6138
EPI-111_S29_L005_R1_001_val_1_bismark_bt2_pe.bam	100000	340	99660	0	0	16	324	8929	25	2521	77	2422	24	3860
EPI-113_S30_L005_R1_001_val_1_bismark_bt2_pe.bam	100000	737	99263	0	0	44	693	19356	50	5494	169	5243	71	8329
EPI-119_S31_L005_R1_001_val_1_bismark_bt2_pe.bam	100000	1825	98175	0	0	84	1741	53002	144	15363	442	14896	176	21981
EPI-120_S32_L005_R1_001_val_1_bismark_bt2_pe.bam	100000	509	99491	0	0	24	485	13549	42	3848	117	3831	51	5660
EPI-127_S33_L005_R1_001_val_1_bismark_bt2_pe.bam	100000	472	99528	0	0	18	454	13318	35	3839	121	3702	37	5584
EPI-128_S34_L005_R1_001_val_1_bismark_bt2_pe.bam	100000	315	99685	0	0	13	302	8566	34	2453	88	2319	25	3647
EPI-135_S35_L005_R1_001_val_1_bismark_bt2_pe.bam	100000	402	99598	0	0	20	382	9552	33	2762	113	2680	23	3941
EPI-136_S36_L005_R1_001_val_1_bismark_bt2_pe.bam	100000	577	99423	0	0	26	551	14291	42	3913	145	3786	45	6360
EPI-143_S37_L005_R1_001_val_1_bismark_bt2_pe.bam	100000	728	99272	0	0	33	695	19494	52	5481	168	5356	55	8382
EPI-145_S38_L005_R1_001_val_1_bismark_bt2_pe.bam	100000	461	99539	0	0	23	438	12533	38	3610	131	3351	48	5355
EPI-151_S2_L002_R1_001_val_1_bismark_bt2_pe.bam	100000	621	99379	0	0	67	554	14731	52	4112	173	4085	63	6246
EPI-152_S3_L002_R1_001_val_1_bismark_bt2_pe.bam	100000	469	99531	0	0	40	429	11618	33	3293	119	3160	55	4958
EPI-153_S4_L002_R1_001_val_1_bismark_bt2_pe.bam	100000	637	99363	0	0	28	609	16860	63	4751	182	4561	108	7195
EPI-154_S5_L002_R1_001_val_1_bismark_bt2_pe.bam	100000	829	99171	0	0	95	734	19966	72	5701	222	5462	91	8418
EPI-159_S6_L002_R1_001_val_1_bismark_bt2_pe.bam	100000	488	99512	0	0	36	452	12096	42	3449	122	3269	55	5159
EPI-160_S7_L002_R1_001_val_1_bismark_bt2_pe.bam	100000	1825	98175	0	0	285	1540	37041	119	10386	404	9934	194	16004
EPI-161_S8_L002_R1_001_val_1_bismark_bt2_pe.bam	100000	587	99413	0	0	54	533	13454	56	3815	130	3620	61	5772
EPI-162_S9_L002_R1_001_val_1_bismark_bt2_pe.bam	100000	615	99385	0	0	38	577	13600	46	3867	163	3658	77	5789
EPI-167_S10_L002_R1_001_val_1_bismark_bt2_pe.bam	100000	781	99219	0	0	3	778	25908	141	7575	274	7400	229	10289
EPI-168_S11_L002_R1_001_val_1_bismark_bt2_pe.bam	100000	579	99421	0	0	34	545	15205	50	4307	157	4240	81	6370
EPI-169_S12_L002_R1_001_val_1_bismark_bt2_pe.bam	100000	322	99678	0	0	16	306	7462	35	2155	97	1968	37	3170
EPI-170_S13_L002_R1_001_val_1_bismark_bt2_pe.bam	100000	464	99536	0	0	18	446	10292	33	2966	134	2731	51	4377
EPI-175_S14_L003_R1_001_val_1_bismark_bt2_pe.bam	100000	792	99208	0	0	91	701	19358	55	5529	197	5183	79	8315
EPI-176_S15_L003_R1_001_val_1_bismark_bt2_pe.bam	100000	1154	98846	0	0	130	1024	28773	89	8039	313	7716	116	12500
EPI-181_S16_L003_R1_001_val_1_bismark_bt2_pe.bam	100000	420	99580	0	0	16	404	11808	38	3223	100	3187	51	5209
EPI-182_S17_L003_R1_001_val_1_bismark_bt2_pe.bam	100000	466	99534	0	0	27	439	12269	36	3461	114	3259	50	5349
EPI-184_S18_L003_R1_001_val_1_bismark_bt2_pe.bam	100000	457	99543	0	0	27	430	11172	37	3105	114	3016	57	4843
EPI-185_S19_L003_R1_001_val_1_bismark_bt2_pe.bam	100000	499	99501	0	0	35	464	11528	53	3227	122	2992	44	5090
EPI-187_S20_L003_R1_001_val_1_bismark_bt2_pe.bam	100000	406	99594	0	0	37	369	9684	41	2765	99	2683	45	4051
EPI-188_S21_L003_R1_001_val_1_bismark_bt2_pe.bam	100000	560	99440	0	0	30	530	11593	47	3255	132	3131	56	4972
EPI-193_S22_L003_R1_001_val_1_bismark_bt2_pe.bam	100000	532	99468	0	0	46	486	11192	48	3142	130	3089	47	4736
EPI-194_S23_L003_R1_001_val_1_bismark_bt2_pe.bam	100000	608	99392	0	0	69	539	14288	46	4116	162	3776	73	6115
EPI-199_S24_L003_R1_001_val_1_bismark_bt2_pe.bam	100000	488	99512	0	0	69	419	9683	35	2658	106	2560	44	4280
EPI-200_S25_L003_R1_001_val_1_bismark_bt2_pe.bam	100000	472	99528	0	0	42	430	9743	31	2716	129	2646	52	4169
EPI-205_S26_L004_R1_001_val_1_bismark_bt2_pe.bam	100000	505	99495	0	0	38	467	10791	46	3064	119	2993	49	4520
EPI-206_S27_L004_R1_001_val_1_bismark_bt2_pe.bam	100000	513	99487	0	0	40	473	10280	37	2932	112	2805	54	4340
EPI-208_S28_L004_R1_001_val_1_bismark_bt2_pe.bam	100000	1086	98914	0	0	137	949	19603	90	5645	260	5406	107	8095
EPI-209_S29_L004_R1_001_val_1_bismark_bt2_pe.bam	100000	640	99360	0	0	50	590	14628	55	4196	175	4002	46	6154
EPI-214_S30_L004_R1_001_val_1_bismark_bt2_pe.bam	100000	624	99376	0	0	63	561	14784	49	4185	143	3998	62	6347
EPI-215_S31_L004_R1_001_val_1_bismark_bt2_pe.bam	100000	689	99311	0	0	85	604	13319	48	3846	175	3720	54	5476
EPI-220_S32_L004_R1_001_val_1_bismark_bt2_pe.bam	100000	409	99591	0	0	29	380	9032	31	2523	84	2458	49	3887
EPI-221_S33_L004_R1_001_val_1_bismark_bt2_pe.bam	100000	469	99531	0	0	38	431	9867	36	2818	119	2742	49	4103
EPI-226_S34_L004_R1_001_val_1_bismark_bt2_pe.bam	100000	321	99679	0	0	23	298	7486	16	2160	85	2046	41	3138
EPI-227_S35_L004_R1_001_val_1_bismark_bt2_pe.bam	100000	393	99607	0	0	25	368	8619	34	2515	118	2277	36	3639
EPI-229_S36_L004_R1_001_val_1_bismark_bt2_pe.bam	100000	706	99294	0	0	78	628	14593	36	4152	199	3985	61	6160
EPI-230_S37_L004_R1_001_val_1_bismark_bt2_pe.bam	100000	710	99290	0	0	71	639	16104	50	4617	179	4304	49	6905
EPI-41_S38_L005_R1_001_val_1_bismark_bt2_pe.bam	100000	617	99383	0	0	78	539	12164	37	3620	136	3380	60	4931
EPI-42_S39_L005_R1_001_val_1_bismark_bt2_pe.bam	100000	521	99479	0	0	50	471	10284	29	3058	127	2873	48	4149
EPI-43_S40_L005_R1_001_val_1_bismark_bt2_pe.bam	100000	841	99159	0	0	114	727	16624	52	4807	205	4570	58	6932
EPI-44_S41_L005_R1_001_val_1_bismark_bt2_pe.bam	100000	662	99338	0	0	114	548	11969	30	3484	140	3241	51	5023