CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1 62 1.59 63 2 1 73 1.35 74 3 0 70 0.00 70 4 0 41 0.00 41 5 0 36 0.00 36 6 0 25 0.00 25 7 0 34 0.00 34 8 0 35 0.00 35 9 0 25 0.00 25 10 0 28 0.00 28 11 1 30 3.23 31 12 0 31 0.00 31 13 0 28 0.00 28 14 0 40 0.00 40 15 0 34 0.00 34 16 0 31 0.00 31 17 0 33 0.00 33 18 0 40 0.00 40 19 0 36 0.00 36 20 0 43 0.00 43 21 0 40 0.00 40 22 1 36 2.70 37 23 0 34 0.00 34 24 0 31 0.00 31 25 0 32 0.00 32 26 0 37 0.00 37 27 0 38 0.00 38 28 0 40 0.00 40 29 0 31 0.00 31 30 0 28 0.00 28 31 0 37 0.00 37 32 0 24 0.00 24 33 0 27 0.00 27 34 0 32 0.00 32 35 0 42 0.00 42 36 2 37 5.13 39 37 0 32 0.00 32 38 0 52 0.00 52 39 1 37 2.63 38 40 0 31 0.00 31 41 1 21 4.55 22 42 0 29 0.00 29 43 1 32 3.03 33 44 1 15 6.25 16 45 0 28 0.00 28 46 0 30 0.00 30 47 0 29 0.00 29 48 0 21 0.00 21 49 0 31 0.00 31 50 1 34 2.86 35 51 3 41 6.82 44 52 0 24 0.00 24 53 0 34 0.00 34 54 0 28 0.00 28 55 0 30 0.00 30 56 0 30 0.00 30 57 0 26 0.00 26 58 0 38 0.00 38 59 0 34 0.00 34 60 1 36 2.70 37 61 1 21 4.55 22 62 0 27 0.00 27 63 0 14 0.00 14 64 0 15 0.00 15 65 0 18 0.00 18 66 1 28 3.45 29 67 0 21 0.00 21 68 0 22 0.00 22 69 0 26 0.00 26 70 0 20 0.00 20 71 1 24 4.00 25 72 0 27 0.00 27 73 0 17 0.00 17 74 0 22 0.00 22 75 0 17 0.00 17 76 0 17 0.00 17 77 0 21 0.00 21 78 1 24 4.00 25 79 0 18 0.00 18 80 0 19 0.00 19 81 2 31 6.06 33 82 0 25 0.00 25 83 0 13 0.00 13 84 1 17 5.56 18 85 0 18 0.00 18 86 0 13 0.00 13 87 0 23 0.00 23 88 0 7 0.00 7 89 0 11 0.00 11 90 0 17 0.00 17 91 0 10 0.00 10 92 0 14 0.00 14 93 1 17 5.56 18 94 1 19 5.00 20 95 0 14 0.00 14 96 0 11 0.00 11 97 1 11 8.33 12 98 0 13 0.00 13 99 0 17 0.00 17 100 0 16 0.00 16 101 1 14 6.67 15 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 42 24 63.64 66 2 21 18 53.85 39 3 6 19 24.00 25 4 5 36 12.20 41 5 2 26 7.14 28 6 1 21 4.55 22 7 4 41 8.89 45 8 1 33 2.94 34 9 0 27 0.00 27 10 2 30 6.25 32 11 0 42 0.00 42 12 1 34 2.86 35 13 0 33 0.00 33 14 0 35 0.00 35 15 0 24 0.00 24 16 0 31 0.00 31 17 0 41 0.00 41 18 0 20 0.00 20 19 0 39 0.00 39 20 0 41 0.00 41 21 1 22 4.35 23 22 1 38 2.56 39 23 0 30 0.00 30 24 2 26 7.14 28 25 0 43 0.00 43 26 0 32 0.00 32 27 1 34 2.86 35 28 0 33 0.00 33 29 1 31 3.12 32 30 0 34 0.00 34 31 0 31 0.00 31 32 0 34 0.00 34 33 1 35 2.78 36 34 1 28 3.45 29 35 3 37 7.50 40 36 0 41 0.00 41 37 0 45 0.00 45 38 0 24 0.00 24 39 0 31 0.00 31 40 0 29 0.00 29 41 0 44 0.00 44 42 1 43 2.27 44 43 1 25 3.85 26 44 0 32 0.00 32 45 0 32 0.00 32 46 0 20 0.00 20 47 1 27 3.57 28 48 0 21 0.00 21 49 0 36 0.00 36 50 0 25 0.00 25 51 0 16 0.00 16 52 2 31 6.06 33 53 1 25 3.85 26 54 0 35 0.00 35 55 0 27 0.00 27 56 0 30 0.00 30 57 1 33 2.94 34 58 1 21 4.55 22 59 0 27 0.00 27 60 0 28 0.00 28 61 0 30 0.00 30 62 1 28 3.45 29 63 1 29 3.33 30 64 0 23 0.00 23 65 1 26 3.70 27 66 0 26 0.00 26 67 0 32 0.00 32 68 0 16 0.00 16 69 0 21 0.00 21 70 0 39 0.00 39 71 1 22 4.35 23 72 1 13 7.14 14 73 0 11 0.00 11 74 0 21 0.00 21 75 0 22 0.00 22 76 0 14 0.00 14 77 0 19 0.00 19 78 0 22 0.00 22 79 0 19 0.00 19 80 1 18 5.26 19 81 0 22 0.00 22 82 2 18 10.00 20 83 0 18 0.00 18 84 0 21 0.00 21 85 0 11 0.00 11 86 1 15 6.25 16 87 1 11 8.33 12 88 1 16 5.88 17 89 0 20 0.00 20 90 2 19 9.52 21 91 1 14 6.67 15 92 0 19 0.00 19 93 0 9 0.00 9 94 0 23 0.00 23 95 1 10 9.09 11 96 0 11 0.00 11 97 0 10 0.00 10 98 1 13 7.14 14 99 1 7 12.50 8 100 1 9 10.00 10 101 3 12 20.00 15 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 7 16 30.43 23 2 1 17 5.56 18 3 3 32 8.57 35 4 4 31 11.43 35 5 0 35 0.00 35 6 1 36 2.70 37 7 2 46 4.17 48 8 0 52 0.00 52 9 0 43 0.00 43 10 0 49 0.00 49 11 1 59 1.67 60 12 0 46 0.00 46 13 0 47 0.00 47 14 2 51 3.77 53 15 0 49 0.00 49 16 0 75 0.00 75 17 0 60 0.00 60 18 1 66 1.49 67 19 1 64 1.54 65 20 1 56 1.75 57 21 1 49 2.00 50 22 0 57 0.00 57 23 0 46 0.00 46 24 1 58 1.69 59 25 0 64 0.00 64 26 0 52 0.00 52 27 0 48 0.00 48 28 0 52 0.00 52 29 0 54 0.00 54 30 0 50 0.00 50 31 0 55 0.00 55 32 1 55 1.79 56 33 0 53 0.00 53 34 0 47 0.00 47 35 1 38 2.56 39 36 1 32 3.03 33 37 0 44 0.00 44 38 0 42 0.00 42 39 1 37 2.63 38 40 0 36 0.00 36 41 1 40 2.44 41 42 0 36 0.00 36 43 0 39 0.00 39 44 0 50 0.00 50 45 1 38 2.56 39 46 1 58 1.69 59 47 0 52 0.00 52 48 0 49 0.00 49 49 1 35 2.78 36 50 1 39 2.50 40 51 0 34 0.00 34 52 1 37 2.63 38 53 0 56 0.00 56 54 0 41 0.00 41 55 0 50 0.00 50 56 0 44 0.00 44 57 1 40 2.44 41 58 0 29 0.00 29 59 0 32 0.00 32 60 0 37 0.00 37 61 1 40 2.44 41 62 1 37 2.63 38 63 0 41 0.00 41 64 0 42 0.00 42 65 1 47 2.08 48 66 0 46 0.00 46 67 0 34 0.00 34 68 0 35 0.00 35 69 0 38 0.00 38 70 0 35 0.00 35 71 0 30 0.00 30 72 0 34 0.00 34 73 0 36 0.00 36 74 0 39 0.00 39 75 0 18 0.00 18 76 0 42 0.00 42 77 0 33 0.00 33 78 1 38 2.56 39 79 0 39 0.00 39 80 0 32 0.00 32 81 0 23 0.00 23 82 0 22 0.00 22 83 0 25 0.00 25 84 0 22 0.00 22 85 0 23 0.00 23 86 0 20 0.00 20 87 0 28 0.00 28 88 0 27 0.00 27 89 0 23 0.00 23 90 0 22 0.00 22 91 0 24 0.00 24 92 0 22 0.00 22 93 0 26 0.00 26 94 0 11 0.00 11 95 0 18 0.00 18 96 0 28 0.00 28 97 0 21 0.00 21 98 0 17 0.00 17 99 0 11 0.00 11 100 0 16 0.00 16 101 0 17 0.00 17 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 13 7.14 14 2 1 8 11.11 9 3 0 14 0.00 14 4 0 19 0.00 19 5 0 18 0.00 18 6 0 14 0.00 14 7 0 9 0.00 9 8 0 14 0.00 14 9 0 15 0.00 15 10 0 9 0.00 9 11 0 7 0.00 7 12 0 10 0.00 10 13 0 11 0.00 11 14 0 7 0.00 7 15 0 16 0.00 16 16 0 8 0.00 8 17 0 7 0.00 7 18 0 11 0.00 11 19 0 14 0.00 14 20 0 9 0.00 9 21 0 9 0.00 9 22 0 7 0.00 7 23 0 12 0.00 12 24 0 10 0.00 10 25 0 9 0.00 9 26 0 12 0.00 12 27 1 9 10.00 10 28 0 4 0.00 4 29 0 12 0.00 12 30 0 5 0.00 5 31 0 18 0.00 18 32 0 11 0.00 11 33 0 13 0.00 13 34 0 4 0.00 4 35 0 5 0.00 5 36 0 5 0.00 5 37 0 8 0.00 8 38 0 5 0.00 5 39 0 8 0.00 8 40 0 4 0.00 4 41 0 8 0.00 8 42 0 9 0.00 9 43 0 4 0.00 4 44 0 6 0.00 6 45 0 0 0 46 1 2 33.33 3 47 0 11 0.00 11 48 0 5 0.00 5 49 0 5 0.00 5 50 0 11 0.00 11 51 0 4 0.00 4 52 0 7 0.00 7 53 0 3 0.00 3 54 0 4 0.00 4 55 0 6 0.00 6 56 0 4 0.00 4 57 0 5 0.00 5 58 0 7 0.00 7 59 0 12 0.00 12 60 0 5 0.00 5 61 0 3 0.00 3 62 0 4 0.00 4 63 0 3 0.00 3 64 0 7 0.00 7 65 0 10 0.00 10 66 0 7 0.00 7 67 0 5 0.00 5 68 0 2 0.00 2 69 0 4 0.00 4 70 0 3 0.00 3 71 0 4 0.00 4 72 0 7 0.00 7 73 0 4 0.00 4 74 0 3 0.00 3 75 0 4 0.00 4 76 0 4 0.00 4 77 0 4 0.00 4 78 0 2 0.00 2 79 0 4 0.00 4 80 0 5 0.00 5 81 0 4 0.00 4 82 0 3 0.00 3 83 0 4 0.00 4 84 0 2 0.00 2 85 0 6 0.00 6 86 0 3 0.00 3 87 0 3 0.00 3 88 0 4 0.00 4 89 0 1 0.00 1 90 0 5 0.00 5 91 0 3 0.00 3 92 0 6 0.00 6 93 0 4 0.00 4 94 0 2 0.00 2 95 0 3 0.00 3 96 0 1 0.00 1 97 0 6 0.00 6 98 0 1 0.00 1 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 6 0.00 6 2 1 5 16.67 6 3 5 16 23.81 21 4 0 9 0.00 9 5 0 19 0.00 19 6 0 8 0.00 8 7 0 5 0.00 5 8 1 15 6.25 16 9 0 10 0.00 10 10 0 17 0.00 17 11 0 11 0.00 11 12 0 9 0.00 9 13 0 4 0.00 4 14 1 14 6.67 15 15 0 14 0.00 14 16 0 8 0.00 8 17 0 9 0.00 9 18 0 10 0.00 10 19 0 6 0.00 6 20 0 9 0.00 9 21 0 6 0.00 6 22 0 8 0.00 8 23 0 11 0.00 11 24 1 12 7.69 13 25 0 5 0.00 5 26 1 8 11.11 9 27 0 7 0.00 7 28 0 12 0.00 12 29 0 12 0.00 12 30 1 4 20.00 5 31 0 5 0.00 5 32 0 9 0.00 9 33 0 14 0.00 14 34 0 6 0.00 6 35 0 8 0.00 8 36 0 8 0.00 8 37 0 10 0.00 10 38 0 6 0.00 6 39 0 2 0.00 2 40 0 6 0.00 6 41 0 6 0.00 6 42 0 8 0.00 8 43 0 5 0.00 5 44 0 6 0.00 6 45 0 9 0.00 9 46 0 4 0.00 4 47 0 7 0.00 7 48 0 13 0.00 13 49 0 4 0.00 4 50 0 5 0.00 5 51 0 7 0.00 7 52 0 3 0.00 3 53 0 5 0.00 5 54 0 3 0.00 3 55 0 8 0.00 8 56 0 5 0.00 5 57 0 6 0.00 6 58 0 1 0.00 1 59 0 9 0.00 9 60 0 8 0.00 8 61 0 6 0.00 6 62 0 4 0.00 4 63 0 5 0.00 5 64 0 5 0.00 5 65 0 5 0.00 5 66 0 4 0.00 4 67 1 3 25.00 4 68 2 8 20.00 10 69 0 6 0.00 6 70 1 6 14.29 7 71 0 4 0.00 4 72 0 4 0.00 4 73 0 5 0.00 5 74 0 3 0.00 3 75 0 4 0.00 4 76 0 4 0.00 4 77 0 1 0.00 1 78 0 6 0.00 6 79 0 2 0.00 2 80 0 4 0.00 4 81 0 3 0.00 3 82 0 5 0.00 5 83 0 3 0.00 3 84 0 3 0.00 3 85 0 9 0.00 9 86 0 4 0.00 4 87 0 0 0 88 0 3 0.00 3 89 0 3 0.00 3 90 0 2 0.00 2 91 0 1 0.00 1 92 0 3 0.00 3 93 0 7 0.00 7 94 0 2 0.00 2 95 0 0 0 96 0 3 0.00 3 97 0 4 0.00 4 98 0 2 0.00 2 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 3 40.00 5 2 2 7 22.22 9 3 0 4 0.00 4 4 3 5 37.50 8 5 0 12 0.00 12 6 0 16 0.00 16 7 0 19 0.00 19 8 0 18 0.00 18 9 0 21 0.00 21 10 0 25 0.00 25 11 0 26 0.00 26 12 0 21 0.00 21 13 0 20 0.00 20 14 0 18 0.00 18 15 1 24 4.00 25 16 0 23 0.00 23 17 0 20 0.00 20 18 0 14 0.00 14 19 0 19 0.00 19 20 0 9 0.00 9 21 0 16 0.00 16 22 0 17 0.00 17 23 0 17 0.00 17 24 0 13 0.00 13 25 0 13 0.00 13 26 0 8 0.00 8 27 0 8 0.00 8 28 0 18 0.00 18 29 0 15 0.00 15 30 0 10 0.00 10 31 0 5 0.00 5 32 0 5 0.00 5 33 0 14 0.00 14 34 0 16 0.00 16 35 0 10 0.00 10 36 0 22 0.00 22 37 0 13 0.00 13 38 0 16 0.00 16 39 0 21 0.00 21 40 0 6 0.00 6 41 0 10 0.00 10 42 0 11 0.00 11 43 0 12 0.00 12 44 0 13 0.00 13 45 0 13 0.00 13 46 0 14 0.00 14 47 0 15 0.00 15 48 0 10 0.00 10 49 1 10 9.09 11 50 0 8 0.00 8 51 0 10 0.00 10 52 0 15 0.00 15 53 0 15 0.00 15 54 0 14 0.00 14 55 0 8 0.00 8 56 0 8 0.00 8 57 0 11 0.00 11 58 0 10 0.00 10 59 0 4 0.00 4 60 0 8 0.00 8 61 0 12 0.00 12 62 0 11 0.00 11 63 0 5 0.00 5 64 0 11 0.00 11 65 0 8 0.00 8 66 0 14 0.00 14 67 1 16 5.88 17 68 0 14 0.00 14 69 0 13 0.00 13 70 0 11 0.00 11 71 0 10 0.00 10 72 0 8 0.00 8 73 0 7 0.00 7 74 0 11 0.00 11 75 0 8 0.00 8 76 0 8 0.00 8 77 0 11 0.00 11 78 0 9 0.00 9 79 0 10 0.00 10 80 0 7 0.00 7 81 0 2 0.00 2 82 0 6 0.00 6 83 0 7 0.00 7 84 0 5 0.00 5 85 0 3 0.00 3 86 0 6 0.00 6 87 0 7 0.00 7 88 0 4 0.00 4 89 0 7 0.00 7 90 0 6 0.00 6 91 0 3 0.00 3 92 0 5 0.00 5 93 0 7 0.00 7 94 0 8 0.00 8 95 0 5 0.00 5 96 0 4 0.00 4 97 0 4 0.00 4 98 0 7 0.00 7