/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-44_S41_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-44_S41_L005_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
662
Pairs without alignments under any condition
99338
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
22316
Methylated C's in CpG context
61
Methylated C's in CHG context
289
Methylated C's in CHH context
87
Methylated C's in Unknown context
4
Unmethylated C's in CpG context
6526
Unmethylated C's in CHG context
6229
Unmethylated C's in CHH context
9124
Unmethylated C's in Unknown context
2
Percentage methylation (CpG context)
0.9%
Percentage methylation (CHG context)
4.4%
Percentage methylation (CHH context)
0.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
470
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
192
original bottom strand
Deduplication
Alignments analysed
662
Unique alignments
548
Duplicates removed
114
Duplicated alignments were found at 66 different positions
