EPI-43_S40_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 727 lines in total Total number of methylation call strings processed: 1454 Final Cytosine Methylation Report ================================= Total number of C's analysed: 16624 Total methylated C's in CpG context: 52 Total methylated C's in CHG context: 205 Total methylated C's in CHH context: 58 Total C to T conversions in CpG context: 4807 Total C to T conversions in CHG context: 4570 Total C to T conversions in CHH context: 6932 C methylated in CpG context: 1.1% C methylated in CHG context: 4.3% C methylated in CHH context: 0.8%