CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 4 79 4.82 83 2 0 110 0.00 110 3 0 83 0.00 83 4 1 63 1.56 64 5 1 55 1.79 56 6 0 35 0.00 35 7 0 46 0.00 46 8 0 45 0.00 45 9 0 42 0.00 42 10 0 49 0.00 49 11 0 38 0.00 38 12 0 48 0.00 48 13 0 40 0.00 40 14 1 46 2.13 47 15 0 38 0.00 38 16 0 49 0.00 49 17 0 50 0.00 50 18 0 48 0.00 48 19 0 40 0.00 40 20 0 53 0.00 53 21 0 46 0.00 46 22 1 45 2.17 46 23 0 49 0.00 49 24 1 48 2.04 49 25 0 43 0.00 43 26 0 40 0.00 40 27 0 49 0.00 49 28 0 46 0.00 46 29 0 39 0.00 39 30 0 49 0.00 49 31 2 42 4.55 44 32 0 45 0.00 45 33 1 42 2.33 43 34 0 38 0.00 38 35 0 44 0.00 44 36 2 45 4.26 47 37 0 40 0.00 40 38 1 42 2.33 43 39 0 52 0.00 52 40 0 36 0.00 36 41 0 31 0.00 31 42 0 35 0.00 35 43 0 34 0.00 34 44 1 38 2.56 39 45 0 30 0.00 30 46 1 30 3.23 31 47 0 37 0.00 37 48 0 39 0.00 39 49 1 32 3.03 33 50 0 42 0.00 42 51 1 42 2.33 43 52 0 36 0.00 36 53 0 44 0.00 44 54 1 44 2.22 45 55 0 42 0.00 42 56 0 41 0.00 41 57 0 40 0.00 40 58 0 43 0.00 43 59 2 47 4.08 49 60 0 42 0.00 42 61 0 41 0.00 41 62 0 35 0.00 35 63 0 33 0.00 33 64 1 28 3.45 29 65 0 33 0.00 33 66 1 31 3.12 32 67 1 20 4.76 21 68 0 30 0.00 30 69 1 37 2.63 38 70 0 30 0.00 30 71 0 30 0.00 30 72 0 33 0.00 33 73 2 24 7.69 26 74 0 25 0.00 25 75 1 40 2.44 41 76 0 29 0.00 29 77 1 18 5.26 19 78 1 39 2.50 40 79 0 25 0.00 25 80 1 26 3.70 27 81 0 36 0.00 36 82 0 39 0.00 39 83 0 27 0.00 27 84 0 29 0.00 29 85 0 20 0.00 20 86 1 28 3.45 29 87 0 29 0.00 29 88 0 28 0.00 28 89 0 37 0.00 37 90 0 23 0.00 23 91 0 28 0.00 28 92 0 22 0.00 22 93 1 22 4.35 23 94 1 19 5.00 20 95 0 14 0.00 14 96 0 16 0.00 16 97 0 18 0.00 18 98 0 19 0.00 19 99 0 18 0.00 18 100 0 21 0.00 21 101 0 23 0.00 23 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 59 32 64.84 91 2 32 24 57.14 56 3 11 29 27.50 40 4 7 30 18.92 37 5 1 42 2.33 43 6 0 36 0.00 36 7 5 42 10.64 47 8 1 41 2.38 42 9 2 46 4.17 48 10 1 30 3.23 31 11 1 50 1.96 51 12 0 47 0.00 47 13 0 36 0.00 36 14 1 50 1.96 51 15 0 38 0.00 38 16 1 42 2.33 43 17 0 47 0.00 47 18 0 33 0.00 33 19 0 40 0.00 40 20 1 47 2.08 48 21 0 35 0.00 35 22 0 45 0.00 45 23 0 49 0.00 49 24 0 50 0.00 50 25 0 44 0.00 44 26 1 48 2.04 49 27 0 58 0.00 58 28 1 46 2.13 47 29 0 59 0.00 59 30 0 49 0.00 49 31 2 42 4.55 44 32 1 53 1.85 54 33 3 43 6.52 46 34 0 51 0.00 51 35 1 50 1.96 51 36 2 51 3.77 53 37 3 52 5.45 55 38 3 41 6.82 44 39 0 39 0.00 39 40 0 39 0.00 39 41 2 56 3.45 58 42 1 46 2.13 47 43 0 48 0.00 48 44 1 33 2.94 34 45 0 37 0.00 37 46 1 46 2.13 47 47 0 47 0.00 47 48 0 32 0.00 32 49 1 44 2.22 45 50 0 35 0.00 35 51 0 28 0.00 28 52 0 44 0.00 44 53 2 42 4.55 44 54 1 42 2.33 43 55 1 38 2.56 39 56 1 37 2.63 38 57 0 46 0.00 46 58 1 35 2.78 36 59 0 35 0.00 35 60 0 39 0.00 39 61 0 34 0.00 34 62 0 38 0.00 38 63 0 33 0.00 33 64 0 37 0.00 37 65 0 35 0.00 35 66 1 28 3.45 29 67 0 32 0.00 32 68 1 32 3.03 33 69 2 29 6.45 31 70 0 39 0.00 39 71 0 20 0.00 20 72 0 28 0.00 28 73 1 25 3.85 26 74 0 35 0.00 35 75 0 36 0.00 36 76 1 30 3.23 31 77 0 19 0.00 19 78 0 24 0.00 24 79 0 25 0.00 25 80 0 25 0.00 25 81 0 31 0.00 31 82 0 27 0.00 27 83 1 29 3.33 30 84 0 27 0.00 27 85 0 19 0.00 19 86 1 19 5.00 20 87 0 30 0.00 30 88 0 32 0.00 32 89 0 21 0.00 21 90 2 20 9.09 22 91 0 15 0.00 15 92 4 18 18.18 22 93 2 21 8.70 23 94 0 28 0.00 28 95 0 21 0.00 21 96 1 24 4.00 25 97 0 23 0.00 23 98 3 19 13.64 22 99 1 14 6.67 15 100 1 12 7.69 13 101 1 17 5.56 18 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 7 13 35.00 20 2 5 11 31.25 16 3 2 41 4.65 43 4 1 34 2.86 35 5 1 55 1.79 56 6 1 49 2.00 50 7 0 61 0.00 61 8 1 61 1.61 62 9 1 57 1.72 58 10 0 53 0.00 53 11 0 67 0.00 67 12 1 54 1.82 55 13 3 50 5.66 53 14 0 55 0.00 55 15 1 71 1.39 72 16 0 73 0.00 73 17 0 66 0.00 66 18 0 73 0.00 73 19 0 75 0.00 75 20 0 76 0.00 76 21 0 77 0.00 77 22 1 73 1.35 74 23 1 66 1.49 67 24 0 65 0.00 65 25 0 69 0.00 69 26 1 71 1.39 72 27 1 73 1.35 74 28 1 67 1.47 68 29 1 77 1.28 78 30 0 80 0.00 80 31 0 80 0.00 80 32 1 77 1.28 78 33 2 70 2.78 72 34 1 62 1.59 63 35 0 63 0.00 63 36 0 55 0.00 55 37 1 53 1.85 54 38 0 56 0.00 56 39 0 50 0.00 50 40 1 66 1.49 67 41 0 49 0.00 49 42 0 67 0.00 67 43 1 63 1.56 64 44 0 59 0.00 59 45 1 80 1.23 81 46 0 81 0.00 81 47 0 63 0.00 63 48 0 63 0.00 63 49 0 58 0.00 58 50 0 75 0.00 75 51 0 75 0.00 75 52 0 66 0.00 66 53 0 59 0.00 59 54 0 56 0.00 56 55 0 62 0.00 62 56 0 56 0.00 56 57 0 61 0.00 61 58 1 47 2.08 48 59 1 60 1.64 61 60 0 50 0.00 50 61 0 44 0.00 44 62 0 60 0.00 60 63 0 59 0.00 59 64 0 44 0.00 44 65 0 47 0.00 47 66 0 59 0.00 59 67 0 48 0.00 48 68 0 56 0.00 56 69 0 49 0.00 49 70 0 48 0.00 48 71 0 39 0.00 39 72 0 53 0.00 53 73 0 43 0.00 43 74 0 49 0.00 49 75 0 46 0.00 46 76 0 34 0.00 34 77 0 45 0.00 45 78 0 61 0.00 61 79 0 44 0.00 44 80 0 56 0.00 56 81 1 41 2.38 42 82 0 40 0.00 40 83 0 40 0.00 40 84 0 34 0.00 34 85 0 33 0.00 33 86 0 31 0.00 31 87 0 38 0.00 38 88 0 34 0.00 34 89 0 23 0.00 23 90 0 31 0.00 31 91 0 34 0.00 34 92 0 37 0.00 37 93 0 41 0.00 41 94 0 26 0.00 26 95 0 33 0.00 33 96 0 30 0.00 30 97 2 22 8.33 24 98 2 23 8.00 25 99 0 21 0.00 21 100 0 23 0.00 23 101 0 24 0.00 24 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4 21 16.00 25 2 6 10 37.50 16 3 2 26 7.14 28 4 2 18 10.00 20 5 1 29 3.33 30 6 0 16 0.00 16 7 0 18 0.00 18 8 0 19 0.00 19 9 0 29 0.00 29 10 0 21 0.00 21 11 0 18 0.00 18 12 0 12 0.00 12 13 0 16 0.00 16 14 0 9 0.00 9 15 1 22 4.35 23 16 0 9 0.00 9 17 0 24 0.00 24 18 0 17 0.00 17 19 0 14 0.00 14 20 0 15 0.00 15 21 0 16 0.00 16 22 0 9 0.00 9 23 0 13 0.00 13 24 0 13 0.00 13 25 0 18 0.00 18 26 0 16 0.00 16 27 0 13 0.00 13 28 0 7 0.00 7 29 0 15 0.00 15 30 0 11 0.00 11 31 0 15 0.00 15 32 0 20 0.00 20 33 0 15 0.00 15 34 0 11 0.00 11 35 0 2 0.00 2 36 0 7 0.00 7 37 0 5 0.00 5 38 0 13 0.00 13 39 0 8 0.00 8 40 0 5 0.00 5 41 0 9 0.00 9 42 0 11 0.00 11 43 0 14 0.00 14 44 0 8 0.00 8 45 0 11 0.00 11 46 0 7 0.00 7 47 0 14 0.00 14 48 0 16 0.00 16 49 0 10 0.00 10 50 0 8 0.00 8 51 0 12 0.00 12 52 0 7 0.00 7 53 0 5 0.00 5 54 0 3 0.00 3 55 0 7 0.00 7 56 0 2 0.00 2 57 0 7 0.00 7 58 0 11 0.00 11 59 0 15 0.00 15 60 0 9 0.00 9 61 0 5 0.00 5 62 0 9 0.00 9 63 0 5 0.00 5 64 0 12 0.00 12 65 0 12 0.00 12 66 0 5 0.00 5 67 0 6 0.00 6 68 0 4 0.00 4 69 0 7 0.00 7 70 0 6 0.00 6 71 1 3 25.00 4 72 0 6 0.00 6 73 0 2 0.00 2 74 0 6 0.00 6 75 0 8 0.00 8 76 0 3 0.00 3 77 0 4 0.00 4 78 0 6 0.00 6 79 0 8 0.00 8 80 0 12 0.00 12 81 0 2 0.00 2 82 0 3 0.00 3 83 0 6 0.00 6 84 0 5 0.00 5 85 0 2 0.00 2 86 0 4 0.00 4 87 0 7 0.00 7 88 0 5 0.00 5 89 0 1 0.00 1 90 0 4 0.00 4 91 0 6 0.00 6 92 0 4 0.00 4 93 0 5 0.00 5 94 0 2 0.00 2 95 0 4 0.00 4 96 0 2 0.00 2 97 0 2 0.00 2 98 0 4 0.00 4 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3 14 17.65 17 2 7 13 35.00 20 3 4 17 19.05 21 4 0 17 0.00 17 5 1 24 4.00 25 6 0 18 0.00 18 7 1 17 5.56 18 8 0 22 0.00 22 9 0 15 0.00 15 10 0 22 0.00 22 11 0 21 0.00 21 12 0 17 0.00 17 13 0 11 0.00 11 14 0 12 0.00 12 15 0 23 0.00 23 16 0 14 0.00 14 17 0 15 0.00 15 18 0 19 0.00 19 19 0 9 0.00 9 20 0 16 0.00 16 21 0 7 0.00 7 22 1 12 7.69 13 23 0 10 0.00 10 24 0 18 0.00 18 25 0 8 0.00 8 26 1 13 7.14 14 27 0 13 0.00 13 28 0 13 0.00 13 29 0 16 0.00 16 30 0 12 0.00 12 31 0 12 0.00 12 32 0 13 0.00 13 33 0 12 0.00 12 34 0 14 0.00 14 35 1 8 11.11 9 36 0 19 0.00 19 37 0 12 0.00 12 38 0 9 0.00 9 39 0 9 0.00 9 40 0 14 0.00 14 41 0 9 0.00 9 42 0 9 0.00 9 43 0 9 0.00 9 44 0 9 0.00 9 45 0 10 0.00 10 46 0 7 0.00 7 47 0 7 0.00 7 48 0 14 0.00 14 49 1 12 7.69 13 50 0 10 0.00 10 51 0 13 0.00 13 52 1 11 8.33 12 53 0 6 0.00 6 54 0 10 0.00 10 55 0 3 0.00 3 56 0 11 0.00 11 57 0 5 0.00 5 58 0 13 0.00 13 59 0 9 0.00 9 60 0 6 0.00 6 61 0 7 0.00 7 62 0 6 0.00 6 63 0 5 0.00 5 64 1 10 9.09 11 65 1 6 14.29 7 66 1 6 14.29 7 67 2 4 33.33 6 68 2 17 10.53 19 69 0 8 0.00 8 70 0 5 0.00 5 71 0 5 0.00 5 72 0 7 0.00 7 73 0 8 0.00 8 74 0 6 0.00 6 75 0 9 0.00 9 76 0 3 0.00 3 77 0 3 0.00 3 78 0 7 0.00 7 79 0 6 0.00 6 80 0 8 0.00 8 81 0 2 0.00 2 82 0 4 0.00 4 83 0 8 0.00 8 84 1 5 16.67 6 85 0 11 0.00 11 86 0 1 0.00 1 87 0 2 0.00 2 88 0 3 0.00 3 89 0 6 0.00 6 90 0 1 0.00 1 91 0 1 0.00 1 92 0 1 0.00 1 93 0 4 0.00 4 94 0 4 0.00 4 95 1 1 50.00 2 96 0 2 0.00 2 97 0 7 0.00 7 98 0 1 0.00 1 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4 3 57.14 7 2 1 7 12.50 8 3 0 8 0.00 8 4 1 9 10.00 10 5 0 13 0.00 13 6 0 12 0.00 12 7 0 22 0.00 22 8 0 30 0.00 30 9 0 24 0.00 24 10 0 28 0.00 28 11 0 41 0.00 41 12 0 34 0.00 34 13 0 29 0.00 29 14 1 18 5.26 19 15 0 31 0.00 31 16 1 33 2.94 34 17 0 35 0.00 35 18 0 20 0.00 20 19 0 23 0.00 23 20 0 14 0.00 14 21 0 31 0.00 31 22 0 19 0.00 19 23 0 23 0.00 23 24 0 16 0.00 16 25 0 19 0.00 19 26 0 25 0.00 25 27 0 17 0.00 17 28 0 17 0.00 17 29 0 28 0.00 28 30 0 16 0.00 16 31 0 12 0.00 12 32 0 14 0.00 14 33 1 20 4.76 21 34 0 21 0.00 21 35 0 23 0.00 23 36 0 29 0.00 29 37 0 15 0.00 15 38 0 17 0.00 17 39 0 30 0.00 30 40 0 22 0.00 22 41 0 20 0.00 20 42 1 17 5.56 18 43 1 18 5.26 19 44 0 15 0.00 15 45 0 22 0.00 22 46 0 12 0.00 12 47 0 20 0.00 20 48 0 17 0.00 17 49 0 15 0.00 15 50 0 15 0.00 15 51 0 20 0.00 20 52 0 18 0.00 18 53 0 15 0.00 15 54 0 21 0.00 21 55 0 18 0.00 18 56 0 17 0.00 17 57 0 10 0.00 10 58 0 17 0.00 17 59 0 17 0.00 17 60 0 7 0.00 7 61 0 11 0.00 11 62 0 10 0.00 10 63 0 13 0.00 13 64 0 14 0.00 14 65 0 11 0.00 11 66 0 12 0.00 12 67 0 12 0.00 12 68 0 15 0.00 15 69 0 17 0.00 17 70 0 17 0.00 17 71 0 11 0.00 11 72 0 9 0.00 9 73 0 11 0.00 11 74 0 12 0.00 12 75 0 15 0.00 15 76 0 10 0.00 10 77 0 13 0.00 13 78 0 11 0.00 11 79 0 10 0.00 10 80 0 8 0.00 8 81 0 10 0.00 10 82 0 11 0.00 11 83 1 12 7.69 13 84 0 12 0.00 12 85 0 9 0.00 9 86 0 10 0.00 10 87 0 9 0.00 9 88 0 8 0.00 8 89 0 8 0.00 8 90 0 9 0.00 9 91 0 12 0.00 12 92 1 7 12.50 8 93 0 10 0.00 10 94 0 9 0.00 9 95 0 10 0.00 10 96 0 7 0.00 7 97 0 9 0.00 9 98 0 11 0.00 11