/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-43_S40_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-43_S40_L005_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
841
Pairs without alignments under any condition
99159
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
29803
Methylated C's in CpG context
102
Methylated C's in CHG context
354
Methylated C's in CHH context
94
Methylated C's in Unknown context
3
Unmethylated C's in CpG context
8642
Unmethylated C's in CHG context
8293
Unmethylated C's in CHH context
12318
Unmethylated C's in Unknown context
13
Percentage methylation (CpG context)
1.2%
Percentage methylation (CHG context)
4.1%
Percentage methylation (CHH context)
0.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
583
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
258
original bottom strand
Deduplication
Alignments analysed
841
Unique alignments
727
Duplicates removed
114
Duplicated alignments were found at 62 different positions
