CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1 66 1.49 67 2 1 42 2.33 43 3 0 68 0.00 68 4 0 35 0.00 35 5 0 32 0.00 32 6 0 19 0.00 19 7 0 19 0.00 19 8 0 28 0.00 28 9 0 28 0.00 28 10 0 30 0.00 30 11 0 38 0.00 38 12 0 27 0.00 27 13 0 24 0.00 24 14 0 29 0.00 29 15 1 31 3.12 32 16 0 21 0.00 21 17 0 37 0.00 37 18 1 41 2.38 42 19 0 42 0.00 42 20 0 29 0.00 29 21 0 36 0.00 36 22 0 27 0.00 27 23 1 31 3.12 32 24 0 35 0.00 35 25 0 27 0.00 27 26 0 30 0.00 30 27 0 28 0.00 28 28 0 34 0.00 34 29 0 27 0.00 27 30 0 30 0.00 30 31 0 31 0.00 31 32 0 24 0.00 24 33 1 25 3.85 26 34 0 19 0.00 19 35 1 44 2.22 45 36 0 38 0.00 38 37 0 24 0.00 24 38 0 25 0.00 25 39 0 33 0.00 33 40 0 37 0.00 37 41 0 30 0.00 30 42 0 23 0.00 23 43 0 24 0.00 24 44 0 21 0.00 21 45 0 24 0.00 24 46 0 24 0.00 24 47 0 24 0.00 24 48 1 26 3.70 27 49 0 27 0.00 27 50 0 34 0.00 34 51 1 25 3.85 26 52 0 23 0.00 23 53 1 34 2.86 35 54 0 24 0.00 24 55 0 23 0.00 23 56 0 26 0.00 26 57 0 21 0.00 21 58 0 37 0.00 37 59 1 38 2.56 39 60 1 28 3.45 29 61 0 28 0.00 28 62 1 18 5.26 19 63 1 22 4.35 23 64 0 27 0.00 27 65 1 18 5.26 19 66 0 22 0.00 22 67 0 28 0.00 28 68 0 28 0.00 28 69 0 21 0.00 21 70 0 15 0.00 15 71 0 17 0.00 17 72 0 19 0.00 19 73 0 11 0.00 11 74 0 25 0.00 25 75 0 22 0.00 22 76 0 16 0.00 16 77 0 17 0.00 17 78 0 25 0.00 25 79 1 26 3.70 27 80 0 19 0.00 19 81 0 27 0.00 27 82 0 18 0.00 18 83 0 24 0.00 24 84 3 14 17.65 17 85 1 12 7.69 13 86 0 19 0.00 19 87 0 11 0.00 11 88 0 17 0.00 17 89 0 9 0.00 9 90 0 12 0.00 12 91 1 6 14.29 7 92 0 14 0.00 14 93 0 9 0.00 9 94 0 11 0.00 11 95 0 14 0.00 14 96 0 8 0.00 8 97 1 11 8.33 12 98 0 13 0.00 13 99 0 14 0.00 14 100 0 15 0.00 15 101 1 12 7.69 13 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 25 18 58.14 43 2 21 12 63.64 33 3 12 20 37.50 32 4 4 26 13.33 30 5 0 29 0.00 29 6 1 16 5.88 17 7 2 29 6.45 31 8 0 34 0.00 34 9 2 14 12.50 16 10 1 29 3.33 30 11 0 33 0.00 33 12 0 29 0.00 29 13 1 28 3.45 29 14 1 35 2.78 36 15 0 31 0.00 31 16 0 23 0.00 23 17 0 36 0.00 36 18 1 22 4.35 23 19 0 25 0.00 25 20 0 41 0.00 41 21 0 33 0.00 33 22 2 27 6.90 29 23 1 32 3.03 33 24 0 24 0.00 24 25 0 34 0.00 34 26 0 36 0.00 36 27 0 29 0.00 29 28 0 27 0.00 27 29 1 37 2.63 38 30 0 33 0.00 33 31 0 24 0.00 24 32 0 35 0.00 35 33 0 28 0.00 28 34 2 35 5.41 37 35 1 39 2.50 40 36 0 34 0.00 34 37 0 23 0.00 23 38 1 28 3.45 29 39 1 30 3.23 31 40 0 36 0.00 36 41 0 28 0.00 28 42 1 30 3.23 31 43 0 23 0.00 23 44 2 23 8.00 25 45 1 27 3.57 28 46 1 20 4.76 21 47 0 26 0.00 26 48 0 26 0.00 26 49 0 32 0.00 32 50 0 30 0.00 30 51 0 16 0.00 16 52 0 23 0.00 23 53 0 28 0.00 28 54 1 21 4.55 22 55 0 20 0.00 20 56 1 19 5.00 20 57 0 31 0.00 31 58 0 36 0.00 36 59 1 38 2.56 39 60 0 28 0.00 28 61 1 29 3.33 30 62 0 24 0.00 24 63 1 28 3.45 29 64 0 21 0.00 21 65 0 25 0.00 25 66 0 29 0.00 29 67 0 22 0.00 22 68 0 15 0.00 15 69 0 22 0.00 22 70 2 30 6.25 32 71 0 19 0.00 19 72 1 20 4.76 21 73 0 19 0.00 19 74 0 18 0.00 18 75 0 13 0.00 13 76 1 20 4.76 21 77 0 20 0.00 20 78 0 22 0.00 22 79 0 21 0.00 21 80 0 12 0.00 12 81 2 12 14.29 14 82 0 18 0.00 18 83 0 17 0.00 17 84 0 8 0.00 8 85 1 21 4.55 22 86 0 13 0.00 13 87 0 19 0.00 19 88 1 9 10.00 10 89 1 8 11.11 9 90 1 17 5.56 18 91 2 11 15.38 13 92 2 7 22.22 9 93 2 13 13.33 15 94 0 14 0.00 14 95 1 14 6.67 15 96 0 11 0.00 11 97 1 9 10.00 10 98 1 12 7.69 13 99 2 6 25.00 8 100 0 3 0.00 3 101 1 9 10.00 10 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 6 8 42.86 14 2 5 9 35.71 14 3 0 28 0.00 28 4 1 26 3.70 27 5 0 28 0.00 28 6 4 34 10.53 38 7 1 39 2.50 40 8 1 43 2.27 44 9 0 32 0.00 32 10 0 31 0.00 31 11 0 48 0.00 48 12 0 38 0.00 38 13 0 34 0.00 34 14 0 34 0.00 34 15 0 36 0.00 36 16 0 51 0.00 51 17 0 44 0.00 44 18 1 34 2.86 35 19 0 43 0.00 43 20 0 38 0.00 38 21 0 36 0.00 36 22 0 42 0.00 42 23 1 42 2.33 43 24 0 45 0.00 45 25 0 38 0.00 38 26 0 47 0.00 47 27 0 43 0.00 43 28 1 33 2.94 34 29 0 58 0.00 58 30 1 45 2.17 46 31 0 40 0.00 40 32 0 61 0.00 61 33 0 46 0.00 46 34 1 37 2.63 38 35 1 43 2.27 44 36 0 36 0.00 36 37 0 43 0.00 43 38 0 40 0.00 40 39 0 34 0.00 34 40 0 30 0.00 30 41 1 37 2.63 38 42 0 38 0.00 38 43 0 40 0.00 40 44 0 46 0.00 46 45 1 48 2.04 49 46 0 47 0.00 47 47 0 46 0.00 46 48 2 39 4.88 41 49 0 28 0.00 28 50 0 33 0.00 33 51 1 46 2.13 47 52 0 36 0.00 36 53 1 32 3.03 33 54 0 28 0.00 28 55 1 37 2.63 38 56 0 47 0.00 47 57 0 37 0.00 37 58 0 26 0.00 26 59 0 31 0.00 31 60 1 43 2.27 44 61 0 39 0.00 39 62 0 29 0.00 29 63 0 37 0.00 37 64 0 46 0.00 46 65 0 35 0.00 35 66 0 28 0.00 28 67 0 33 0.00 33 68 0 35 0.00 35 69 0 36 0.00 36 70 0 32 0.00 32 71 3 23 11.54 26 72 0 34 0.00 34 73 0 22 0.00 22 74 0 33 0.00 33 75 0 26 0.00 26 76 1 21 4.55 22 77 0 31 0.00 31 78 0 27 0.00 27 79 1 22 4.35 23 80 0 23 0.00 23 81 0 29 0.00 29 82 0 22 0.00 22 83 1 27 3.57 28 84 0 26 0.00 26 85 1 21 4.55 22 86 1 17 5.56 18 87 0 19 0.00 19 88 0 20 0.00 20 89 0 18 0.00 18 90 0 25 0.00 25 91 0 19 0.00 19 92 0 20 0.00 20 93 0 23 0.00 23 94 0 24 0.00 24 95 0 17 0.00 17 96 0 11 0.00 11 97 0 22 0.00 22 98 0 14 0.00 14 99 0 11 0.00 11 100 0 12 0.00 12 101 2 21 8.70 23 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 10 9.09 11 2 1 12 7.69 13 3 1 13 7.14 14 4 2 9 18.18 11 5 0 19 0.00 19 6 0 6 0.00 6 7 0 10 0.00 10 8 0 9 0.00 9 9 0 7 0.00 7 10 0 14 0.00 14 11 0 10 0.00 10 12 0 6 0.00 6 13 1 13 7.14 14 14 0 5 0.00 5 15 0 8 0.00 8 16 0 16 0.00 16 17 0 6 0.00 6 18 0 13 0.00 13 19 0 14 0.00 14 20 0 7 0.00 7 21 0 11 0.00 11 22 0 3 0.00 3 23 0 11 0.00 11 24 0 9 0.00 9 25 0 9 0.00 9 26 0 10 0.00 10 27 0 8 0.00 8 28 0 8 0.00 8 29 0 8 0.00 8 30 0 7 0.00 7 31 0 8 0.00 8 32 0 6 0.00 6 33 0 7 0.00 7 34 0 6 0.00 6 35 0 4 0.00 4 36 0 8 0.00 8 37 0 6 0.00 6 38 0 7 0.00 7 39 0 4 0.00 4 40 0 5 0.00 5 41 0 6 0.00 6 42 0 6 0.00 6 43 0 4 0.00 4 44 0 5 0.00 5 45 0 1 0.00 1 46 0 4 0.00 4 47 0 5 0.00 5 48 0 5 0.00 5 49 0 5 0.00 5 50 0 2 0.00 2 51 0 5 0.00 5 52 0 6 0.00 6 53 0 5 0.00 5 54 0 2 0.00 2 55 0 1 0.00 1 56 0 4 0.00 4 57 0 2 0.00 2 58 0 4 0.00 4 59 0 2 0.00 2 60 0 0 0 61 0 0 0 62 0 3 0.00 3 63 0 5 0.00 5 64 0 2 0.00 2 65 0 1 0.00 1 66 0 4 0.00 4 67 0 3 0.00 3 68 0 0 0 69 0 5 0.00 5 70 0 2 0.00 2 71 0 1 0.00 1 72 0 4 0.00 4 73 0 1 0.00 1 74 0 5 0.00 5 75 0 2 0.00 2 76 0 0 0 77 0 2 0.00 2 78 0 0 0 79 0 4 0.00 4 80 0 5 0.00 5 81 0 3 0.00 3 82 0 5 0.00 5 83 0 1 0.00 1 84 0 1 0.00 1 85 0 3 0.00 3 86 0 0 0 87 0 1 0.00 1 88 0 2 0.00 2 89 0 3 0.00 3 90 0 1 0.00 1 91 0 2 0.00 2 92 0 4 0.00 4 93 0 2 0.00 2 94 0 4 0.00 4 95 0 5 0.00 5 96 0 1 0.00 1 97 0 3 0.00 3 98 0 1 0.00 1 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 5 16.67 6 2 1 8 11.11 9 3 5 11 31.25 16 4 3 0 100.00 3 5 0 14 0.00 14 6 1 15 6.25 16 7 0 3 0.00 3 8 0 5 0.00 5 9 0 10 0.00 10 10 0 15 0.00 15 11 0 5 0.00 5 12 1 9 10.00 10 13 0 3 0.00 3 14 0 11 0.00 11 15 0 8 0.00 8 16 0 7 0.00 7 17 0 7 0.00 7 18 0 11 0.00 11 19 0 11 0.00 11 20 0 11 0.00 11 21 0 5 0.00 5 22 0 10 0.00 10 23 0 3 0.00 3 24 0 9 0.00 9 25 0 1 0.00 1 26 0 8 0.00 8 27 0 7 0.00 7 28 0 9 0.00 9 29 0 7 0.00 7 30 0 7 0.00 7 31 0 4 0.00 4 32 0 4 0.00 4 33 0 6 0.00 6 34 1 9 10.00 10 35 0 3 0.00 3 36 0 10 0.00 10 37 0 8 0.00 8 38 0 6 0.00 6 39 0 11 0.00 11 40 0 8 0.00 8 41 0 5 0.00 5 42 0 4 0.00 4 43 0 5 0.00 5 44 0 9 0.00 9 45 0 5 0.00 5 46 0 7 0.00 7 47 0 7 0.00 7 48 0 4 0.00 4 49 0 4 0.00 4 50 0 9 0.00 9 51 0 8 0.00 8 52 0 4 0.00 4 53 0 2 0.00 2 54 0 5 0.00 5 55 0 6 0.00 6 56 0 6 0.00 6 57 0 8 0.00 8 58 0 6 0.00 6 59 0 10 0.00 10 60 0 3 0.00 3 61 0 3 0.00 3 62 0 4 0.00 4 63 0 3 0.00 3 64 0 3 0.00 3 65 0 3 0.00 3 66 0 3 0.00 3 67 0 3 0.00 3 68 1 1 50.00 2 69 0 0 0 70 0 6 0.00 6 71 1 5 16.67 6 72 0 2 0.00 2 73 0 4 0.00 4 74 0 3 0.00 3 75 0 4 0.00 4 76 0 1 0.00 1 77 0 0 0 78 0 5 0.00 5 79 0 1 0.00 1 80 0 2 0.00 2 81 0 1 0.00 1 82 0 1 0.00 1 83 0 1 0.00 1 84 0 2 0.00 2 85 0 8 0.00 8 86 0 2 0.00 2 87 0 3 0.00 3 88 0 1 0.00 1 89 0 2 0.00 2 90 0 1 0.00 1 91 0 1 0.00 1 92 0 1 0.00 1 93 0 5 0.00 5 94 0 1 0.00 1 95 0 1 0.00 1 96 0 1 0.00 1 97 0 3 0.00 3 98 0 2 0.00 2 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 3 0.00 3 2 1 5 16.67 6 3 0 4 0.00 4 4 0 2 0.00 2 5 0 10 0.00 10 6 0 7 0.00 7 7 0 6 0.00 6 8 0 22 0.00 22 9 0 14 0.00 14 10 0 18 0.00 18 11 0 23 0.00 23 12 0 16 0.00 16 13 0 16 0.00 16 14 1 16 5.88 17 15 0 23 0.00 23 16 0 14 0.00 14 17 0 12 0.00 12 18 0 15 0.00 15 19 0 12 0.00 12 20 0 7 0.00 7 21 0 10 0.00 10 22 0 12 0.00 12 23 0 8 0.00 8 24 0 8 0.00 8 25 0 12 0.00 12 26 0 14 0.00 14 27 0 7 0.00 7 28 0 15 0.00 15 29 0 11 0.00 11 30 0 13 0.00 13 31 0 8 0.00 8 32 0 8 0.00 8 33 0 13 0.00 13 34 0 10 0.00 10 35 0 7 0.00 7 36 0 15 0.00 15 37 0 8 0.00 8 38 0 10 0.00 10 39 0 12 0.00 12 40 0 10 0.00 10 41 0 11 0.00 11 42 0 4 0.00 4 43 0 11 0.00 11 44 0 13 0.00 13 45 1 9 10.00 10 46 0 7 0.00 7 47 0 5 0.00 5 48 0 6 0.00 6 49 0 6 0.00 6 50 0 8 0.00 8 51 0 7 0.00 7 52 0 4 0.00 4 53 0 11 0.00 11 54 0 9 0.00 9 55 1 11 8.33 12 56 0 10 0.00 10 57 0 10 0.00 10 58 0 5 0.00 5 59 0 10 0.00 10 60 0 9 0.00 9 61 0 5 0.00 5 62 0 4 0.00 4 63 0 7 0.00 7 64 0 15 0.00 15 65 1 12 7.69 13 66 0 8 0.00 8 67 0 10 0.00 10 68 0 8 0.00 8 69 0 6 0.00 6 70 0 2 0.00 2 71 0 8 0.00 8 72 0 5 0.00 5 73 0 6 0.00 6 74 1 6 14.29 7 75 0 3 0.00 3 76 0 9 0.00 9 77 0 9 0.00 9 78 0 8 0.00 8 79 0 8 0.00 8 80 0 5 0.00 5 81 0 2 0.00 2 82 0 5 0.00 5 83 0 6 0.00 6 84 0 7 0.00 7 85 0 0 0 86 0 6 0.00 6 87 0 4 0.00 4 88 0 4 0.00 4 89 0 4 0.00 4 90 0 4 0.00 4 91 0 2 0.00 2 92 0 5 0.00 5 93 0 2 0.00 2 94 0 1 0.00 1 95 0 2 0.00 2 96 0 4 0.00 4 97 0 7 0.00 7 98 0 6 0.00 6