/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-42_S39_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-42_S39_L005_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
521
Pairs without alignments under any condition
99479
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
18303
Methylated C's in CpG context
55
Methylated C's in CHG context
232
Methylated C's in CHH context
88
Methylated C's in Unknown context
0
Unmethylated C's in CpG context
5528
Unmethylated C's in CHG context
5252
Unmethylated C's in CHH context
7148
Unmethylated C's in Unknown context
3
Percentage methylation (CpG context)
1.0%
Percentage methylation (CHG context)
4.2%
Percentage methylation (CHH context)
1.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
385
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
136
original bottom strand
Deduplication
Alignments analysed
521
Unique alignments
471
Duplicates removed
50
Duplicated alignments were found at 34 different positions