EPI-41_S38_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 539 lines in total Total number of methylation call strings processed: 1078 Final Cytosine Methylation Report ================================= Total number of C's analysed: 12164 Total methylated C's in CpG context: 37 Total methylated C's in CHG context: 136 Total methylated C's in CHH context: 60 Total C to T conversions in CpG context: 3620 Total C to T conversions in CHG context: 3380 Total C to T conversions in CHH context: 4931 C methylated in CpG context: 1.0% C methylated in CHG context: 3.9% C methylated in CHH context: 1.2%