CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 2 64 3.03 66 2 3 69 4.17 72 3 0 72 0.00 72 4 0 35 0.00 35 5 0 35 0.00 35 6 1 34 2.86 35 7 1 30 3.23 31 8 0 31 0.00 31 9 0 34 0.00 34 10 0 35 0.00 35 11 0 40 0.00 40 12 0 28 0.00 28 13 0 35 0.00 35 14 0 35 0.00 35 15 0 31 0.00 31 16 0 28 0.00 28 17 0 35 0.00 35 18 0 34 0.00 34 19 0 37 0.00 37 20 0 31 0.00 31 21 0 46 0.00 46 22 0 35 0.00 35 23 0 29 0.00 29 24 0 40 0.00 40 25 0 33 0.00 33 26 0 23 0.00 23 27 0 39 0.00 39 28 0 30 0.00 30 29 0 33 0.00 33 30 0 32 0.00 32 31 0 44 0.00 44 32 0 27 0.00 27 33 1 42 2.33 43 34 1 29 3.33 30 35 0 32 0.00 32 36 0 37 0.00 37 37 0 32 0.00 32 38 0 34 0.00 34 39 0 31 0.00 31 40 2 29 6.45 31 41 0 38 0.00 38 42 0 32 0.00 32 43 0 35 0.00 35 44 1 25 3.85 26 45 0 25 0.00 25 46 0 35 0.00 35 47 1 30 3.23 31 48 2 33 5.71 35 49 0 36 0.00 36 50 1 31 3.12 32 51 0 33 0.00 33 52 0 29 0.00 29 53 1 38 2.56 39 54 0 30 0.00 30 55 0 31 0.00 31 56 1 28 3.45 29 57 0 29 0.00 29 58 0 35 0.00 35 59 0 41 0.00 41 60 0 35 0.00 35 61 0 23 0.00 23 62 0 28 0.00 28 63 1 28 3.45 29 64 0 14 0.00 14 65 0 20 0.00 20 66 0 22 0.00 22 67 0 23 0.00 23 68 0 16 0.00 16 69 0 22 0.00 22 70 0 19 0.00 19 71 0 27 0.00 27 72 0 33 0.00 33 73 0 19 0.00 19 74 0 24 0.00 24 75 0 29 0.00 29 76 0 21 0.00 21 77 0 16 0.00 16 78 0 25 0.00 25 79 1 23 4.17 24 80 0 30 0.00 30 81 2 27 6.90 29 82 0 18 0.00 18 83 0 18 0.00 18 84 1 19 5.00 20 85 0 19 0.00 19 86 0 13 0.00 13 87 0 25 0.00 25 88 0 20 0.00 20 89 0 17 0.00 17 90 0 18 0.00 18 91 0 17 0.00 17 92 0 14 0.00 14 93 0 19 0.00 19 94 0 13 0.00 13 95 0 16 0.00 16 96 1 14 6.67 15 97 1 18 5.26 19 98 0 17 0.00 17 99 0 22 0.00 22 100 0 21 0.00 21 101 0 18 0.00 18 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 39 18 68.42 57 2 21 14 60.00 35 3 5 23 17.86 28 4 6 34 15.00 40 5 1 34 2.86 35 6 4 25 13.79 29 7 1 25 3.85 26 8 1 32 3.03 33 9 0 29 0.00 29 10 1 28 3.45 29 11 0 32 0.00 32 12 1 36 2.70 37 13 1 46 2.13 47 14 1 36 2.70 37 15 0 37 0.00 37 16 0 31 0.00 31 17 0 43 0.00 43 18 0 27 0.00 27 19 1 23 4.17 24 20 0 37 0.00 37 21 1 33 2.94 34 22 0 30 0.00 30 23 0 36 0.00 36 24 0 25 0.00 25 25 0 31 0.00 31 26 1 37 2.63 38 27 2 42 4.55 44 28 1 40 2.44 41 29 0 44 0.00 44 30 0 36 0.00 36 31 1 31 3.12 32 32 0 40 0.00 40 33 0 34 0.00 34 34 0 30 0.00 30 35 2 43 4.44 45 36 0 42 0.00 42 37 1 38 2.56 39 38 0 36 0.00 36 39 0 26 0.00 26 40 1 36 2.70 37 41 0 43 0.00 43 42 1 30 3.23 31 43 0 28 0.00 28 44 3 28 9.68 31 45 1 25 3.85 26 46 0 29 0.00 29 47 2 32 5.88 34 48 0 31 0.00 31 49 0 22 0.00 22 50 1 24 4.00 25 51 0 24 0.00 24 52 0 25 0.00 25 53 0 29 0.00 29 54 1 26 3.70 27 55 0 29 0.00 29 56 1 29 3.33 30 57 0 32 0.00 32 58 1 29 3.33 30 59 1 24 4.00 25 60 0 20 0.00 20 61 0 31 0.00 31 62 0 32 0.00 32 63 0 27 0.00 27 64 1 28 3.45 29 65 0 23 0.00 23 66 1 16 5.88 17 67 0 23 0.00 23 68 0 25 0.00 25 69 1 29 3.33 30 70 0 30 0.00 30 71 0 27 0.00 27 72 0 23 0.00 23 73 0 19 0.00 19 74 0 20 0.00 20 75 1 23 4.17 24 76 0 22 0.00 22 77 0 23 0.00 23 78 0 21 0.00 21 79 0 22 0.00 22 80 1 20 4.76 21 81 0 25 0.00 25 82 0 25 0.00 25 83 0 24 0.00 24 84 0 20 0.00 20 85 1 11 8.33 12 86 0 17 0.00 17 87 0 17 0.00 17 88 1 11 8.33 12 89 0 13 0.00 13 90 2 17 10.53 19 91 2 20 9.09 22 92 1 19 5.00 20 93 1 15 6.25 16 94 0 25 0.00 25 95 0 13 0.00 13 96 1 11 8.33 12 97 0 8 0.00 8 98 0 11 0.00 11 99 1 8 11.11 9 100 0 10 0.00 10 101 2 12 14.29 14 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 8 15 34.78 23 2 4 17 19.05 21 3 3 28 9.68 31 4 3 28 9.68 31 5 2 35 5.41 37 6 1 30 3.23 31 7 0 41 0.00 41 8 1 50 1.96 51 9 1 37 2.63 38 10 0 45 0.00 45 11 0 44 0.00 44 12 1 44 2.22 45 13 0 48 0.00 48 14 0 54 0.00 54 15 0 55 0.00 55 16 0 57 0.00 57 17 0 50 0.00 50 18 0 43 0.00 43 19 0 41 0.00 41 20 1 54 1.82 55 21 0 37 0.00 37 22 1 47 2.08 48 23 0 56 0.00 56 24 0 56 0.00 56 25 0 61 0.00 61 26 0 54 0.00 54 27 0 61 0.00 61 28 0 50 0.00 50 29 0 60 0.00 60 30 0 57 0.00 57 31 0 60 0.00 60 32 1 60 1.64 61 33 1 45 2.17 46 34 0 41 0.00 41 35 0 50 0.00 50 36 0 41 0.00 41 37 0 29 0.00 29 38 0 44 0.00 44 39 2 42 4.55 44 40 1 41 2.38 42 41 0 39 0.00 39 42 0 44 0.00 44 43 0 60 0.00 60 44 0 50 0.00 50 45 0 62 0.00 62 46 0 59 0.00 59 47 0 48 0.00 48 48 1 48 2.04 49 49 0 39 0.00 39 50 0 38 0.00 38 51 0 50 0.00 50 52 0 55 0.00 55 53 0 56 0.00 56 54 0 51 0.00 51 55 0 41 0.00 41 56 1 39 2.50 40 57 0 44 0.00 44 58 0 37 0.00 37 59 0 34 0.00 34 60 0 36 0.00 36 61 0 40 0.00 40 62 1 33 2.94 34 63 0 46 0.00 46 64 1 40 2.44 41 65 0 38 0.00 38 66 0 34 0.00 34 67 0 35 0.00 35 68 1 33 2.94 34 69 0 27 0.00 27 70 0 43 0.00 43 71 1 39 2.50 40 72 0 22 0.00 22 73 0 36 0.00 36 74 0 46 0.00 46 75 0 34 0.00 34 76 0 33 0.00 33 77 0 35 0.00 35 78 1 37 2.63 38 79 0 28 0.00 28 80 0 24 0.00 24 81 0 40 0.00 40 82 0 18 0.00 18 83 0 28 0.00 28 84 2 23 8.00 25 85 0 25 0.00 25 86 0 22 0.00 22 87 1 18 5.26 19 88 1 26 3.70 27 89 0 24 0.00 24 90 0 26 0.00 26 91 1 26 3.70 27 92 0 22 0.00 22 93 0 18 0.00 18 94 0 16 0.00 16 95 0 16 0.00 16 96 0 19 0.00 19 97 0 18 0.00 18 98 0 18 0.00 18 99 1 15 6.25 16 100 0 14 0.00 14 101 0 25 0.00 25 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 11 8.33 12 2 4 11 26.67 15 3 2 20 9.09 22 4 1 15 6.25 16 5 0 24 0.00 24 6 0 14 0.00 14 7 0 11 0.00 11 8 0 17 0.00 17 9 0 14 0.00 14 10 0 12 0.00 12 11 0 10 0.00 10 12 0 8 0.00 8 13 0 13 0.00 13 14 0 4 0.00 4 15 0 14 0.00 14 16 0 4 0.00 4 17 0 10 0.00 10 18 0 15 0.00 15 19 0 13 0.00 13 20 0 6 0.00 6 21 0 12 0.00 12 22 0 4 0.00 4 23 0 12 0.00 12 24 0 10 0.00 10 25 0 14 0.00 14 26 0 11 0.00 11 27 0 12 0.00 12 28 0 9 0.00 9 29 0 8 0.00 8 30 0 10 0.00 10 31 0 16 0.00 16 32 0 12 0.00 12 33 0 7 0.00 7 34 0 11 0.00 11 35 0 4 0.00 4 36 0 7 0.00 7 37 0 12 0.00 12 38 0 3 0.00 3 39 0 10 0.00 10 40 0 5 0.00 5 41 0 3 0.00 3 42 0 8 0.00 8 43 0 7 0.00 7 44 0 6 0.00 6 45 0 1 0.00 1 46 0 4 0.00 4 47 0 10 0.00 10 48 0 5 0.00 5 49 1 7 12.50 8 50 0 8 0.00 8 51 0 3 0.00 3 52 0 7 0.00 7 53 0 3 0.00 3 54 0 5 0.00 5 55 0 3 0.00 3 56 0 3 0.00 3 57 0 2 0.00 2 58 0 6 0.00 6 59 1 11 8.33 12 60 0 6 0.00 6 61 0 1 0.00 1 62 0 1 0.00 1 63 0 10 0.00 10 64 1 7 12.50 8 65 0 6 0.00 6 66 0 9 0.00 9 67 0 4 0.00 4 68 0 2 0.00 2 69 0 6 0.00 6 70 0 2 0.00 2 71 0 4 0.00 4 72 0 4 0.00 4 73 0 3 0.00 3 74 0 5 0.00 5 75 0 3 0.00 3 76 0 4 0.00 4 77 1 4 20.00 5 78 0 3 0.00 3 79 0 3 0.00 3 80 0 4 0.00 4 81 0 5 0.00 5 82 0 3 0.00 3 83 0 3 0.00 3 84 0 1 0.00 1 85 0 4 0.00 4 86 0 5 0.00 5 87 0 1 0.00 1 88 0 5 0.00 5 89 0 0 0 90 0 1 0.00 1 91 0 4 0.00 4 92 0 5 0.00 5 93 0 4 0.00 4 94 0 1 0.00 1 95 0 0 0 96 0 2 0.00 2 97 0 3 0.00 3 98 0 1 0.00 1 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 9 0.00 9 2 5 9 35.71 14 3 0 13 0.00 13 4 0 7 0.00 7 5 0 15 0.00 15 6 1 19 5.00 20 7 1 9 10.00 10 8 0 15 0.00 15 9 0 16 0.00 16 10 0 14 0.00 14 11 0 6 0.00 6 12 0 16 0.00 16 13 0 12 0.00 12 14 0 17 0.00 17 15 0 16 0.00 16 16 0 7 0.00 7 17 0 9 0.00 9 18 0 10 0.00 10 19 1 14 6.67 15 20 0 10 0.00 10 21 0 7 0.00 7 22 0 8 0.00 8 23 0 6 0.00 6 24 0 11 0.00 11 25 0 8 0.00 8 26 0 10 0.00 10 27 1 8 11.11 9 28 0 9 0.00 9 29 0 16 0.00 16 30 0 3 0.00 3 31 0 9 0.00 9 32 0 12 0.00 12 33 0 16 0.00 16 34 0 5 0.00 5 35 0 11 0.00 11 36 0 7 0.00 7 37 0 9 0.00 9 38 0 6 0.00 6 39 0 4 0.00 4 40 0 5 0.00 5 41 1 8 11.11 9 42 0 5 0.00 5 43 0 4 0.00 4 44 0 9 0.00 9 45 0 9 0.00 9 46 0 5 0.00 5 47 0 8 0.00 8 48 0 8 0.00 8 49 0 5 0.00 5 50 0 8 0.00 8 51 0 11 0.00 11 52 0 6 0.00 6 53 0 2 0.00 2 54 0 5 0.00 5 55 0 4 0.00 4 56 0 7 0.00 7 57 0 4 0.00 4 58 0 3 0.00 3 59 0 6 0.00 6 60 0 7 0.00 7 61 0 2 0.00 2 62 0 3 0.00 3 63 0 4 0.00 4 64 0 7 0.00 7 65 0 5 0.00 5 66 0 1 0.00 1 67 0 4 0.00 4 68 2 10 16.67 12 69 0 4 0.00 4 70 0 5 0.00 5 71 0 9 0.00 9 72 1 6 14.29 7 73 0 3 0.00 3 74 0 2 0.00 2 75 0 7 0.00 7 76 0 4 0.00 4 77 0 2 0.00 2 78 0 5 0.00 5 79 0 2 0.00 2 80 0 4 0.00 4 81 0 2 0.00 2 82 0 5 0.00 5 83 1 2 33.33 3 84 0 9 0.00 9 85 0 5 0.00 5 86 0 3 0.00 3 87 0 2 0.00 2 88 0 2 0.00 2 89 0 5 0.00 5 90 0 1 0.00 1 91 0 1 0.00 1 92 0 3 0.00 3 93 0 4 0.00 4 94 0 3 0.00 3 95 0 4 0.00 4 96 0 2 0.00 2 97 0 3 0.00 3 98 0 3 0.00 3 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 7 7 50.00 14 2 0 8 0.00 8 3 1 5 16.67 6 4 1 4 20.00 5 5 0 9 0.00 9 6 0 14 0.00 14 7 0 17 0.00 17 8 1 23 4.17 24 9 0 18 0.00 18 10 0 28 0.00 28 11 0 30 0.00 30 12 0 15 0.00 15 13 0 22 0.00 22 14 0 15 0.00 15 15 0 27 0.00 27 16 1 25 3.85 26 17 0 14 0.00 14 18 0 17 0.00 17 19 0 16 0.00 16 20 0 13 0.00 13 21 0 16 0.00 16 22 0 13 0.00 13 23 0 12 0.00 12 24 0 11 0.00 11 25 0 15 0.00 15 26 0 16 0.00 16 27 0 9 0.00 9 28 0 21 0.00 21 29 0 15 0.00 15 30 0 7 0.00 7 31 1 7 12.50 8 32 0 7 0.00 7 33 0 18 0.00 18 34 0 16 0.00 16 35 0 13 0.00 13 36 0 16 0.00 16 37 0 8 0.00 8 38 0 15 0.00 15 39 0 21 0.00 21 40 0 17 0.00 17 41 0 10 0.00 10 42 0 12 0.00 12 43 0 8 0.00 8 44 0 14 0.00 14 45 0 6 0.00 6 46 1 9 10.00 10 47 0 12 0.00 12 48 0 10 0.00 10 49 0 9 0.00 9 50 0 3 0.00 3 51 0 9 0.00 9 52 0 12 0.00 12 53 0 11 0.00 11 54 0 10 0.00 10 55 0 9 0.00 9 56 1 7 12.50 8 57 0 6 0.00 6 58 0 9 0.00 9 59 0 10 0.00 10 60 0 7 0.00 7 61 0 8 0.00 8 62 0 5 0.00 5 63 0 6 0.00 6 64 0 8 0.00 8 65 0 4 0.00 4 66 0 9 0.00 9 67 0 10 0.00 10 68 0 10 0.00 10 69 0 12 0.00 12 70 0 13 0.00 13 71 0 9 0.00 9 72 0 6 0.00 6 73 0 9 0.00 9 74 0 13 0.00 13 75 0 7 0.00 7 76 0 6 0.00 6 77 0 10 0.00 10 78 0 3 0.00 3 79 0 8 0.00 8 80 1 5 16.67 6 81 0 3 0.00 3 82 0 6 0.00 6 83 0 8 0.00 8 84 0 6 0.00 6 85 0 5 0.00 5 86 1 5 16.67 6 87 0 6 0.00 6 88 0 3 0.00 3 89 0 4 0.00 4 90 0 5 0.00 5 91 0 6 0.00 6 92 0 4 0.00 4 93 0 5 0.00 5 94 0 7 0.00 7 95 0 4 0.00 4 96 0 4 0.00 4 97 0 3 0.00 3 98 0 5 0.00 5