/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-41_S38_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-41_S38_L005_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
617
Pairs without alignments under any condition
99383
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
22262
Methylated C's in CpG context
66
Methylated C's in CHG context
257
Methylated C's in CHH context
106
Methylated C's in Unknown context
9
Unmethylated C's in CpG context
6651
Unmethylated C's in CHG context
6218
Unmethylated C's in CHH context
8964
Unmethylated C's in Unknown context
4
Percentage methylation (CpG context)
1.0%
Percentage methylation (CHG context)
4.0%
Percentage methylation (CHH context)
1.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
447
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
170
original bottom strand
Deduplication
Alignments analysed
617
Unique alignments
539
Duplicates removed
78
Duplicated alignments were found at 43 different positions
