CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 5 74 6.33 79 2 0 95 0.00 95 3 0 95 0.00 95 4 1 43 2.27 44 5 2 48 4.00 50 6 0 42 0.00 42 7 0 34 0.00 34 8 0 32 0.00 32 9 0 48 0.00 48 10 0 35 0.00 35 11 0 44 0.00 44 12 0 42 0.00 42 13 1 35 2.78 36 14 0 46 0.00 46 15 0 33 0.00 33 16 0 31 0.00 31 17 0 48 0.00 48 18 1 48 2.04 49 19 0 47 0.00 47 20 1 47 2.08 48 21 1 40 2.44 41 22 0 56 0.00 56 23 0 39 0.00 39 24 1 38 2.56 39 25 0 37 0.00 37 26 0 33 0.00 33 27 0 30 0.00 30 28 0 44 0.00 44 29 0 38 0.00 38 30 0 42 0.00 42 31 0 50 0.00 50 32 0 41 0.00 41 33 0 50 0.00 50 34 0 32 0.00 32 35 0 40 0.00 40 36 1 43 2.27 44 37 0 42 0.00 42 38 0 33 0.00 33 39 0 37 0.00 37 40 1 26 3.70 27 41 1 38 2.56 39 42 0 39 0.00 39 43 0 32 0.00 32 44 0 34 0.00 34 45 0 35 0.00 35 46 1 35 2.78 36 47 0 37 0.00 37 48 1 33 2.94 34 49 0 44 0.00 44 50 0 44 0.00 44 51 1 46 2.13 47 52 0 32 0.00 32 53 0 39 0.00 39 54 0 32 0.00 32 55 0 54 0.00 54 56 0 31 0.00 31 57 1 53 1.85 54 58 1 34 2.86 35 59 1 48 2.04 49 60 0 51 0.00 51 61 0 28 0.00 28 62 0 28 0.00 28 63 0 24 0.00 24 64 0 19 0.00 19 65 1 33 2.94 34 66 2 27 6.90 29 67 0 32 0.00 32 68 0 44 0.00 44 69 0 25 0.00 25 70 0 24 0.00 24 71 3 33 8.33 36 72 0 25 0.00 25 73 0 30 0.00 30 74 1 22 4.35 23 75 0 37 0.00 37 76 1 23 4.17 24 77 0 22 0.00 22 78 0 33 0.00 33 79 0 26 0.00 26 80 1 27 3.57 28 81 0 34 0.00 34 82 0 32 0.00 32 83 0 25 0.00 25 84 0 25 0.00 25 85 1 18 5.26 19 86 0 21 0.00 21 87 0 20 0.00 20 88 0 27 0.00 27 89 0 27 0.00 27 90 1 25 3.85 26 91 1 18 5.26 19 92 1 17 5.56 18 93 1 26 3.70 27 94 0 25 0.00 25 95 0 24 0.00 24 96 0 16 0.00 16 97 1 14 6.67 15 98 0 28 0.00 28 99 0 29 0.00 29 100 0 24 0.00 24 101 1 26 3.70 27 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 44 29 60.27 73 2 22 24 47.83 46 3 8 27 22.86 35 4 6 28 17.65 34 5 2 28 6.67 30 6 5 19 20.83 24 7 2 34 5.56 36 8 2 40 4.76 42 9 0 40 0.00 40 10 1 41 2.38 42 11 0 34 0.00 34 12 1 37 2.63 38 13 2 44 4.35 46 14 0 35 0.00 35 15 1 33 2.94 34 16 2 42 4.55 44 17 0 44 0.00 44 18 0 36 0.00 36 19 1 22 4.35 23 20 3 36 7.69 39 21 0 46 0.00 46 22 0 43 0.00 43 23 2 43 4.44 45 24 0 44 0.00 44 25 0 45 0.00 45 26 0 35 0.00 35 27 0 56 0.00 56 28 1 43 2.27 44 29 1 42 2.33 43 30 1 40 2.44 41 31 1 30 3.23 31 32 2 49 3.92 51 33 2 42 4.55 44 34 0 33 0.00 33 35 2 53 3.64 55 36 0 43 0.00 43 37 0 55 0.00 55 38 0 30 0.00 30 39 0 41 0.00 41 40 1 56 1.75 57 41 0 36 0.00 36 42 0 47 0.00 47 43 0 42 0.00 42 44 1 37 2.63 38 45 0 36 0.00 36 46 0 21 0.00 21 47 1 43 2.27 44 48 1 43 2.27 44 49 2 50 3.85 52 50 0 16 0.00 16 51 2 28 6.67 30 52 0 32 0.00 32 53 1 39 2.50 40 54 2 44 4.35 46 55 1 31 3.12 32 56 0 35 0.00 35 57 2 37 5.13 39 58 0 36 0.00 36 59 0 37 0.00 37 60 0 30 0.00 30 61 0 36 0.00 36 62 0 30 0.00 30 63 0 33 0.00 33 64 0 37 0.00 37 65 3 36 7.69 39 66 1 33 2.94 34 67 0 22 0.00 22 68 0 27 0.00 27 69 0 37 0.00 37 70 3 55 5.17 58 71 1 22 4.35 23 72 0 29 0.00 29 73 1 27 3.57 28 74 3 26 10.34 29 75 0 32 0.00 32 76 0 24 0.00 24 77 0 24 0.00 24 78 1 29 3.33 30 79 0 31 0.00 31 80 0 27 0.00 27 81 0 27 0.00 27 82 1 30 3.23 31 83 0 19 0.00 19 84 2 33 5.71 35 85 1 16 5.88 17 86 1 23 4.17 24 87 1 18 5.26 19 88 2 24 7.69 26 89 0 23 0.00 23 90 2 17 10.53 19 91 1 13 7.14 14 92 0 25 0.00 25 93 2 18 10.00 20 94 2 17 10.53 19 95 0 22 0.00 22 96 1 11 8.33 12 97 1 19 5.00 20 98 0 24 0.00 24 99 0 12 0.00 12 100 0 19 0.00 19 101 1 14 6.67 15 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 9 10 47.37 19 2 2 16 11.11 18 3 2 25 7.41 27 4 1 29 3.33 30 5 1 46 2.13 47 6 0 62 0.00 62 7 1 54 1.82 55 8 1 67 1.47 68 9 0 47 0.00 47 10 1 55 1.79 56 11 1 56 1.75 57 12 0 49 0.00 49 13 0 67 0.00 67 14 0 62 0.00 62 15 0 64 0.00 64 16 0 59 0.00 59 17 0 64 0.00 64 18 0 67 0.00 67 19 0 58 0.00 58 20 0 64 0.00 64 21 0 51 0.00 51 22 1 72 1.37 73 23 0 69 0.00 69 24 0 79 0.00 79 25 1 60 1.64 61 26 0 76 0.00 76 27 0 73 0.00 73 28 0 68 0.00 68 29 1 82 1.20 83 30 0 74 0.00 74 31 0 82 0.00 82 32 0 81 0.00 81 33 0 59 0.00 59 34 0 75 0.00 75 35 0 62 0.00 62 36 0 60 0.00 60 37 0 54 0.00 54 38 0 56 0.00 56 39 0 61 0.00 61 40 0 60 0.00 60 41 1 47 2.08 48 42 0 59 0.00 59 43 0 62 0.00 62 44 1 81 1.22 82 45 1 75 1.32 76 46 0 83 0.00 83 47 0 67 0.00 67 48 1 61 1.61 62 49 0 44 0.00 44 50 0 71 0.00 71 51 0 65 0.00 65 52 0 57 0.00 57 53 0 64 0.00 64 54 0 53 0.00 53 55 0 45 0.00 45 56 0 48 0.00 48 57 0 59 0.00 59 58 0 48 0.00 48 59 0 54 0.00 54 60 0 42 0.00 42 61 0 34 0.00 34 62 0 70 0.00 70 63 2 74 2.63 76 64 1 62 1.59 63 65 0 52 0.00 52 66 0 42 0.00 42 67 0 33 0.00 33 68 0 34 0.00 34 69 1 54 1.82 55 70 0 33 0.00 33 71 1 44 2.22 45 72 0 45 0.00 45 73 0 42 0.00 42 74 0 54 0.00 54 75 2 43 4.44 45 76 1 48 2.04 49 77 1 57 1.72 58 78 1 49 2.00 50 79 0 42 0.00 42 80 0 37 0.00 37 81 0 43 0.00 43 82 0 35 0.00 35 83 0 34 0.00 34 84 0 38 0.00 38 85 1 44 2.22 45 86 0 37 0.00 37 87 0 34 0.00 34 88 0 25 0.00 25 89 0 29 0.00 29 90 0 43 0.00 43 91 0 37 0.00 37 92 0 29 0.00 29 93 0 39 0.00 39 94 2 28 6.67 30 95 1 42 2.33 43 96 0 28 0.00 28 97 0 40 0.00 40 98 0 22 0.00 22 99 0 18 0.00 18 100 0 21 0.00 21 101 0 29 0.00 29 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 18 5.26 19 2 4 20 16.67 24 3 3 33 8.33 36 4 2 20 9.09 22 5 0 28 0.00 28 6 0 20 0.00 20 7 0 17 0.00 17 8 0 21 0.00 21 9 0 18 0.00 18 10 0 21 0.00 21 11 0 10 0.00 10 12 0 15 0.00 15 13 0 16 0.00 16 14 0 9 0.00 9 15 0 15 0.00 15 16 0 19 0.00 19 17 0 21 0.00 21 18 0 16 0.00 16 19 0 15 0.00 15 20 0 12 0.00 12 21 0 15 0.00 15 22 0 9 0.00 9 23 0 14 0.00 14 24 0 18 0.00 18 25 1 15 6.25 16 26 0 17 0.00 17 27 0 10 0.00 10 28 0 18 0.00 18 29 0 11 0.00 11 30 0 11 0.00 11 31 0 20 0.00 20 32 0 14 0.00 14 33 0 14 0.00 14 34 0 10 0.00 10 35 0 14 0.00 14 36 0 16 0.00 16 37 0 7 0.00 7 38 0 8 0.00 8 39 0 7 0.00 7 40 0 4 0.00 4 41 0 11 0.00 11 42 0 12 0.00 12 43 0 13 0.00 13 44 0 7 0.00 7 45 0 5 0.00 5 46 0 6 0.00 6 47 0 11 0.00 11 48 0 10 0.00 10 49 0 9 0.00 9 50 0 7 0.00 7 51 0 10 0.00 10 52 0 7 0.00 7 53 1 6 14.29 7 54 0 10 0.00 10 55 0 7 0.00 7 56 0 9 0.00 9 57 0 8 0.00 8 58 0 6 0.00 6 59 0 7 0.00 7 60 0 8 0.00 8 61 0 5 0.00 5 62 0 5 0.00 5 63 0 11 0.00 11 64 0 9 0.00 9 65 0 11 0.00 11 66 0 12 0.00 12 67 0 11 0.00 11 68 0 6 0.00 6 69 0 5 0.00 5 70 0 4 0.00 4 71 0 5 0.00 5 72 0 8 0.00 8 73 0 7 0.00 7 74 0 8 0.00 8 75 0 4 0.00 4 76 0 5 0.00 5 77 0 7 0.00 7 78 0 5 0.00 5 79 0 8 0.00 8 80 0 4 0.00 4 81 0 3 0.00 3 82 0 5 0.00 5 83 0 7 0.00 7 84 0 4 0.00 4 85 0 3 0.00 3 86 0 6 0.00 6 87 0 2 0.00 2 88 0 6 0.00 6 89 0 5 0.00 5 90 0 5 0.00 5 91 0 3 0.00 3 92 0 2 0.00 2 93 0 2 0.00 2 94 0 6 0.00 6 95 0 9 0.00 9 96 0 3 0.00 3 97 0 5 0.00 5 98 0 4 0.00 4 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 5 28.57 7 2 1 11 8.33 12 3 6 22 21.43 28 4 3 15 16.67 18 5 1 15 6.25 16 6 0 28 0.00 28 7 0 11 0.00 11 8 0 19 0.00 19 9 0 18 0.00 18 10 1 22 4.35 23 11 0 12 0.00 12 12 0 11 0.00 11 13 0 13 0.00 13 14 0 18 0.00 18 15 0 25 0.00 25 16 0 15 0.00 15 17 0 8 0.00 8 18 0 12 0.00 12 19 0 17 0.00 17 20 0 15 0.00 15 21 0 12 0.00 12 22 0 12 0.00 12 23 0 9 0.00 9 24 0 19 0.00 19 25 0 7 0.00 7 26 1 16 5.88 17 27 0 16 0.00 16 28 0 19 0.00 19 29 0 13 0.00 13 30 0 7 0.00 7 31 0 11 0.00 11 32 0 13 0.00 13 33 0 13 0.00 13 34 0 16 0.00 16 35 0 11 0.00 11 36 0 15 0.00 15 37 0 11 0.00 11 38 0 3 0.00 3 39 0 20 0.00 20 40 0 6 0.00 6 41 0 15 0.00 15 42 0 9 0.00 9 43 0 6 0.00 6 44 0 18 0.00 18 45 0 12 0.00 12 46 0 11 0.00 11 47 0 8 0.00 8 48 0 8 0.00 8 49 0 10 0.00 10 50 0 13 0.00 13 51 0 13 0.00 13 52 0 10 0.00 10 53 0 8 0.00 8 54 1 9 10.00 10 55 0 8 0.00 8 56 0 15 0.00 15 57 0 7 0.00 7 58 0 8 0.00 8 59 0 10 0.00 10 60 0 7 0.00 7 61 0 9 0.00 9 62 0 7 0.00 7 63 0 7 0.00 7 64 0 11 0.00 11 65 0 5 0.00 5 66 0 7 0.00 7 67 0 8 0.00 8 68 1 10 9.09 11 69 0 9 0.00 9 70 0 9 0.00 9 71 1 12 7.69 13 72 0 3 0.00 3 73 0 6 0.00 6 74 0 7 0.00 7 75 0 10 0.00 10 76 0 2 0.00 2 77 0 4 0.00 4 78 0 7 0.00 7 79 0 1 0.00 1 80 0 6 0.00 6 81 0 2 0.00 2 82 0 7 0.00 7 83 1 6 14.29 7 84 0 9 0.00 9 85 0 5 0.00 5 86 0 6 0.00 6 87 0 10 0.00 10 88 0 3 0.00 3 89 0 6 0.00 6 90 0 3 0.00 3 91 0 6 0.00 6 92 0 3 0.00 3 93 0 4 0.00 4 94 1 4 20.00 5 95 0 4 0.00 4 96 0 4 0.00 4 97 0 7 0.00 7 98 0 6 0.00 6 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 14 0.00 14 2 1 7 12.50 8 3 4 4 50.00 8 4 0 5 0.00 5 5 0 14 0.00 14 6 0 21 0.00 21 7 0 29 0.00 29 8 0 31 0.00 31 9 0 32 0.00 32 10 0 40 0.00 40 11 0 29 0.00 29 12 0 27 0.00 27 13 0 41 0.00 41 14 0 37 0.00 37 15 0 32 0.00 32 16 0 33 0.00 33 17 0 23 0.00 23 18 0 24 0.00 24 19 0 26 0.00 26 20 0 14 0.00 14 21 0 16 0.00 16 22 0 20 0.00 20 23 0 22 0.00 22 24 0 20 0.00 20 25 0 18 0.00 18 26 0 25 0.00 25 27 0 22 0.00 22 28 0 30 0.00 30 29 0 24 0.00 24 30 0 15 0.00 15 31 0 21 0.00 21 32 0 21 0.00 21 33 0 32 0.00 32 34 0 23 0.00 23 35 0 20 0.00 20 36 0 27 0.00 27 37 0 18 0.00 18 38 0 28 0.00 28 39 0 23 0.00 23 40 1 19 5.00 20 41 0 16 0.00 16 42 0 8 0.00 8 43 1 13 7.14 14 44 0 23 0.00 23 45 0 20 0.00 20 46 0 28 0.00 28 47 0 16 0.00 16 48 0 18 0.00 18 49 0 16 0.00 16 50 0 17 0.00 17 51 0 15 0.00 15 52 0 18 0.00 18 53 0 22 0.00 22 54 0 17 0.00 17 55 0 22 0.00 22 56 0 21 0.00 21 57 1 17 5.56 18 58 0 22 0.00 22 59 0 18 0.00 18 60 0 18 0.00 18 61 0 16 0.00 16 62 0 14 0.00 14 63 0 15 0.00 15 64 0 15 0.00 15 65 0 14 0.00 14 66 0 12 0.00 12 67 0 7 0.00 7 68 0 9 0.00 9 69 0 10 0.00 10 70 0 8 0.00 8 71 0 11 0.00 11 72 0 18 0.00 18 73 0 9 0.00 9 74 0 12 0.00 12 75 0 11 0.00 11 76 0 10 0.00 10 77 0 12 0.00 12 78 0 8 0.00 8 79 0 16 0.00 16 80 0 14 0.00 14 81 0 13 0.00 13 82 0 9 0.00 9 83 0 9 0.00 9 84 0 11 0.00 11 85 0 10 0.00 10 86 0 9 0.00 9 87 0 10 0.00 10 88 0 12 0.00 12 89 0 7 0.00 7 90 0 4 0.00 4 91 0 6 0.00 6 92 0 9 0.00 9 93 1 11 8.33 12 94 0 10 0.00 10 95 0 10 0.00 10 96 0 8 0.00 8 97 0 6 0.00 6 98 0 14 0.00 14