EPI-229_S36_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 628 lines in total Total number of methylation call strings processed: 1256 Final Cytosine Methylation Report ================================= Total number of C's analysed: 14593 Total methylated C's in CpG context: 36 Total methylated C's in CHG context: 199 Total methylated C's in CHH context: 61 Total C to T conversions in CpG context: 4152 Total C to T conversions in CHG context: 3985 Total C to T conversions in CHH context: 6160 C methylated in CpG context: 0.9% C methylated in CHG context: 4.8% C methylated in CHH context: 1.0%