CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 4 62 6.06 66 2 1 84 1.18 85 3 0 95 0.00 95 4 2 49 3.92 51 5 0 47 0.00 47 6 0 29 0.00 29 7 0 42 0.00 42 8 1 31 3.12 32 9 0 27 0.00 27 10 0 34 0.00 34 11 0 41 0.00 41 12 1 37 2.63 38 13 0 33 0.00 33 14 0 40 0.00 40 15 0 35 0.00 35 16 0 38 0.00 38 17 0 35 0.00 35 18 0 39 0.00 39 19 0 41 0.00 41 20 0 45 0.00 45 21 0 48 0.00 48 22 0 47 0.00 47 23 0 48 0.00 48 24 0 49 0.00 49 25 0 34 0.00 34 26 1 43 2.27 44 27 0 43 0.00 43 28 0 27 0.00 27 29 0 30 0.00 30 30 0 35 0.00 35 31 1 35 2.78 36 32 0 25 0.00 25 33 0 45 0.00 45 34 0 36 0.00 36 35 0 44 0.00 44 36 0 44 0.00 44 37 2 43 4.44 45 38 0 38 0.00 38 39 1 42 2.33 43 40 0 36 0.00 36 41 0 32 0.00 32 42 0 27 0.00 27 43 1 31 3.12 32 44 0 30 0.00 30 45 0 32 0.00 32 46 0 24 0.00 24 47 0 39 0.00 39 48 1 41 2.38 42 49 0 41 0.00 41 50 0 37 0.00 37 51 1 50 1.96 51 52 0 39 0.00 39 53 0 26 0.00 26 54 0 26 0.00 26 55 0 38 0.00 38 56 0 37 0.00 37 57 0 40 0.00 40 58 0 51 0.00 51 59 1 39 2.50 40 60 0 36 0.00 36 61 0 32 0.00 32 62 0 29 0.00 29 63 0 24 0.00 24 64 0 28 0.00 28 65 0 36 0.00 36 66 1 19 5.00 20 67 1 24 4.00 25 68 0 24 0.00 24 69 0 21 0.00 21 70 0 31 0.00 31 71 1 22 4.35 23 72 0 25 0.00 25 73 0 27 0.00 27 74 0 20 0.00 20 75 1 36 2.70 37 76 0 31 0.00 31 77 0 21 0.00 21 78 1 30 3.23 31 79 0 21 0.00 21 80 0 16 0.00 16 81 0 38 0.00 38 82 0 24 0.00 24 83 0 20 0.00 20 84 0 17 0.00 17 85 0 37 0.00 37 86 0 24 0.00 24 87 0 23 0.00 23 88 0 17 0.00 17 89 0 25 0.00 25 90 0 16 0.00 16 91 1 23 4.17 24 92 0 13 0.00 13 93 0 22 0.00 22 94 0 13 0.00 13 95 0 22 0.00 22 96 0 15 0.00 15 97 0 23 0.00 23 98 0 21 0.00 21 99 0 21 0.00 21 100 0 21 0.00 21 101 0 22 0.00 22 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 54 27 66.67 81 2 29 16 64.44 45 3 11 19 36.67 30 4 4 41 8.89 45 5 3 35 7.89 38 6 3 26 10.34 29 7 1 40 2.44 41 8 3 36 7.69 39 9 0 38 0.00 38 10 0 24 0.00 24 11 2 51 3.77 53 12 0 33 0.00 33 13 0 35 0.00 35 14 0 36 0.00 36 15 1 31 3.12 32 16 0 36 0.00 36 17 1 43 2.27 44 18 0 28 0.00 28 19 0 44 0.00 44 20 1 36 2.70 37 21 2 38 5.00 40 22 1 45 2.17 46 23 0 37 0.00 37 24 1 37 2.63 38 25 1 48 2.04 49 26 0 36 0.00 36 27 1 47 2.08 48 28 4 44 8.33 48 29 0 42 0.00 42 30 1 35 2.78 36 31 1 50 1.96 51 32 1 37 2.63 38 33 1 40 2.44 41 34 0 42 0.00 42 35 0 46 0.00 46 36 1 66 1.49 67 37 1 32 3.03 33 38 2 36 5.26 38 39 0 36 0.00 36 40 0 37 0.00 37 41 0 42 0.00 42 42 0 36 0.00 36 43 0 48 0.00 48 44 2 44 4.35 46 45 1 29 3.33 30 46 0 27 0.00 27 47 2 41 4.65 43 48 2 26 7.14 28 49 1 36 2.70 37 50 1 33 2.94 34 51 2 37 5.13 39 52 0 27 0.00 27 53 0 34 0.00 34 54 2 55 3.51 57 55 0 39 0.00 39 56 0 31 0.00 31 57 1 32 3.03 33 58 0 40 0.00 40 59 0 39 0.00 39 60 1 32 3.03 33 61 2 37 5.13 39 62 0 29 0.00 29 63 0 39 0.00 39 64 0 37 0.00 37 65 1 17 5.56 18 66 0 32 0.00 32 67 1 43 2.27 44 68 1 25 3.85 26 69 0 26 0.00 26 70 2 38 5.00 40 71 0 23 0.00 23 72 1 23 4.17 24 73 0 33 0.00 33 74 1 27 3.57 28 75 0 26 0.00 26 76 0 18 0.00 18 77 0 21 0.00 21 78 3 25 10.71 28 79 1 27 3.57 28 80 0 24 0.00 24 81 1 22 4.35 23 82 0 23 0.00 23 83 2 23 8.00 25 84 2 20 9.09 22 85 0 23 0.00 23 86 0 25 0.00 25 87 0 18 0.00 18 88 0 27 0.00 27 89 1 23 4.17 24 90 2 17 10.53 19 91 0 14 0.00 14 92 1 24 4.00 25 93 0 11 0.00 11 94 0 16 0.00 16 95 0 21 0.00 21 96 0 16 0.00 16 97 1 18 5.26 19 98 0 17 0.00 17 99 0 12 0.00 12 100 0 16 0.00 16 101 0 9 0.00 9 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 6 8 42.86 14 2 3 16 15.79 19 3 2 41 4.65 43 4 2 21 8.70 23 5 2 41 4.65 43 6 1 53 1.85 54 7 3 55 5.17 58 8 2 55 3.51 57 9 0 63 0.00 63 10 1 54 1.82 55 11 0 61 0.00 61 12 1 66 1.49 67 13 0 53 0.00 53 14 2 67 2.90 69 15 1 69 1.43 70 16 0 73 0.00 73 17 1 75 1.32 76 18 0 83 0.00 83 19 0 59 0.00 59 20 0 63 0.00 63 21 1 65 1.52 66 22 0 68 0.00 68 23 0 50 0.00 50 24 1 62 1.59 63 25 0 48 0.00 48 26 0 74 0.00 74 27 0 65 0.00 65 28 0 62 0.00 62 29 2 83 2.35 85 30 1 69 1.43 70 31 0 64 0.00 64 32 0 73 0.00 73 33 0 74 0.00 74 34 0 54 0.00 54 35 0 57 0.00 57 36 1 51 1.92 52 37 2 49 3.92 51 38 0 56 0.00 56 39 0 54 0.00 54 40 0 50 0.00 50 41 0 44 0.00 44 42 0 68 0.00 68 43 0 46 0.00 46 44 0 59 0.00 59 45 1 71 1.39 72 46 0 67 0.00 67 47 0 69 0.00 69 48 0 56 0.00 56 49 0 51 0.00 51 50 0 58 0.00 58 51 0 56 0.00 56 52 0 58 0.00 58 53 0 68 0.00 68 54 2 57 3.39 59 55 0 60 0.00 60 56 1 48 2.04 49 57 0 61 0.00 61 58 0 47 0.00 47 59 0 47 0.00 47 60 0 48 0.00 48 61 0 37 0.00 37 62 0 58 0.00 58 63 0 55 0.00 55 64 0 46 0.00 46 65 0 40 0.00 40 66 0 37 0.00 37 67 0 42 0.00 42 68 0 54 0.00 54 69 0 44 0.00 44 70 1 39 2.50 40 71 1 45 2.17 46 72 1 52 1.89 53 73 0 43 0.00 43 74 0 39 0.00 39 75 0 36 0.00 36 76 0 40 0.00 40 77 0 48 0.00 48 78 0 47 0.00 47 79 0 52 0.00 52 80 0 39 0.00 39 81 1 36 2.70 37 82 0 25 0.00 25 83 0 35 0.00 35 84 0 32 0.00 32 85 0 28 0.00 28 86 2 24 7.69 26 87 0 34 0.00 34 88 0 30 0.00 30 89 0 26 0.00 26 90 0 29 0.00 29 91 0 29 0.00 29 92 0 19 0.00 19 93 0 23 0.00 23 94 0 30 0.00 30 95 0 14 0.00 14 96 0 22 0.00 22 97 1 29 3.33 30 98 0 15 0.00 15 99 0 11 0.00 11 100 0 9 0.00 9 101 0 21 0.00 21 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 7 0.00 7 2 3 24 11.11 27 3 5 25 16.67 30 4 3 15 16.67 18 5 0 26 0.00 26 6 0 11 0.00 11 7 0 9 0.00 9 8 0 18 0.00 18 9 0 15 0.00 15 10 0 16 0.00 16 11 1 22 4.35 23 12 0 15 0.00 15 13 0 17 0.00 17 14 0 6 0.00 6 15 0 11 0.00 11 16 0 8 0.00 8 17 0 15 0.00 15 18 0 16 0.00 16 19 0 13 0.00 13 20 0 14 0.00 14 21 0 18 0.00 18 22 0 5 0.00 5 23 0 7 0.00 7 24 0 15 0.00 15 25 0 12 0.00 12 26 0 13 0.00 13 27 0 9 0.00 9 28 0 5 0.00 5 29 0 12 0.00 12 30 0 7 0.00 7 31 0 15 0.00 15 32 0 13 0.00 13 33 0 9 0.00 9 34 0 5 0.00 5 35 0 5 0.00 5 36 0 7 0.00 7 37 0 13 0.00 13 38 0 7 0.00 7 39 0 8 0.00 8 40 0 8 0.00 8 41 0 4 0.00 4 42 0 8 0.00 8 43 0 11 0.00 11 44 0 9 0.00 9 45 0 4 0.00 4 46 0 5 0.00 5 47 0 7 0.00 7 48 0 13 0.00 13 49 0 6 0.00 6 50 0 7 0.00 7 51 0 7 0.00 7 52 0 12 0.00 12 53 0 9 0.00 9 54 0 5 0.00 5 55 0 6 0.00 6 56 0 5 0.00 5 57 0 1 0.00 1 58 0 8 0.00 8 59 0 5 0.00 5 60 0 6 0.00 6 61 0 3 0.00 3 62 0 4 0.00 4 63 0 6 0.00 6 64 0 11 0.00 11 65 0 6 0.00 6 66 0 6 0.00 6 67 0 3 0.00 3 68 0 4 0.00 4 69 0 8 0.00 8 70 0 3 0.00 3 71 0 2 0.00 2 72 0 4 0.00 4 73 0 3 0.00 3 74 0 3 0.00 3 75 0 4 0.00 4 76 0 1 0.00 1 77 0 5 0.00 5 78 0 5 0.00 5 79 0 5 0.00 5 80 0 7 0.00 7 81 0 7 0.00 7 82 0 4 0.00 4 83 0 4 0.00 4 84 0 3 0.00 3 85 0 2 0.00 2 86 0 6 0.00 6 87 0 3 0.00 3 88 0 4 0.00 4 89 0 3 0.00 3 90 0 1 0.00 1 91 0 0 0 92 0 2 0.00 2 93 0 3 0.00 3 94 0 5 0.00 5 95 0 4 0.00 4 96 0 3 0.00 3 97 0 3 0.00 3 98 0 2 0.00 2 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3 6 33.33 9 2 2 8 20.00 10 3 8 10 44.44 18 4 5 19 20.83 24 5 0 18 0.00 18 6 0 24 0.00 24 7 0 9 0.00 9 8 0 16 0.00 16 9 0 12 0.00 12 10 1 19 5.00 20 11 0 12 0.00 12 12 0 11 0.00 11 13 0 11 0.00 11 14 0 19 0.00 19 15 0 12 0.00 12 16 0 10 0.00 10 17 0 12 0.00 12 18 0 17 0.00 17 19 1 12 7.69 13 20 0 12 0.00 12 21 0 16 0.00 16 22 0 18 0.00 18 23 0 9 0.00 9 24 0 7 0.00 7 25 0 5 0.00 5 26 0 10 0.00 10 27 0 15 0.00 15 28 0 14 0.00 14 29 0 16 0.00 16 30 1 6 14.29 7 31 0 10 0.00 10 32 0 9 0.00 9 33 1 14 6.67 15 34 0 8 0.00 8 35 0 7 0.00 7 36 0 15 0.00 15 37 0 8 0.00 8 38 0 3 0.00 3 39 0 4 0.00 4 40 1 11 8.33 12 41 0 9 0.00 9 42 0 7 0.00 7 43 0 9 0.00 9 44 0 5 0.00 5 45 0 5 0.00 5 46 0 8 0.00 8 47 1 10 9.09 11 48 0 10 0.00 10 49 0 9 0.00 9 50 1 10 9.09 11 51 0 10 0.00 10 52 1 7 12.50 8 53 0 2 0.00 2 54 0 7 0.00 7 55 0 11 0.00 11 56 0 5 0.00 5 57 0 10 0.00 10 58 0 7 0.00 7 59 0 6 0.00 6 60 0 6 0.00 6 61 0 7 0.00 7 62 0 7 0.00 7 63 0 6 0.00 6 64 0 2 0.00 2 65 0 5 0.00 5 66 2 4 33.33 6 67 0 3 0.00 3 68 1 7 12.50 8 69 0 4 0.00 4 70 1 4 20.00 5 71 0 7 0.00 7 72 0 5 0.00 5 73 0 7 0.00 7 74 0 5 0.00 5 75 0 6 0.00 6 76 0 4 0.00 4 77 0 3 0.00 3 78 0 4 0.00 4 79 0 3 0.00 3 80 0 9 0.00 9 81 0 5 0.00 5 82 0 1 0.00 1 83 0 4 0.00 4 84 0 7 0.00 7 85 0 5 0.00 5 86 0 1 0.00 1 87 0 7 0.00 7 88 0 0 0 89 0 7 0.00 7 90 0 2 0.00 2 91 0 3 0.00 3 92 0 1 0.00 1 93 0 3 0.00 3 94 0 4 0.00 4 95 0 2 0.00 2 96 0 1 0.00 1 97 0 2 0.00 2 98 0 2 0.00 2 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4 10 28.57 14 2 0 2 0.00 2 3 2 9 18.18 11 4 4 5 44.44 9 5 0 17 0.00 17 6 0 19 0.00 19 7 0 12 0.00 12 8 0 24 0.00 24 9 0 14 0.00 14 10 0 21 0.00 21 11 0 30 0.00 30 12 0 19 0.00 19 13 0 30 0.00 30 14 0 35 0.00 35 15 0 29 0.00 29 16 0 34 0.00 34 17 0 18 0.00 18 18 0 23 0.00 23 19 0 22 0.00 22 20 0 10 0.00 10 21 0 13 0.00 13 22 0 12 0.00 12 23 0 28 0.00 28 24 1 22 4.35 23 25 0 12 0.00 12 26 0 27 0.00 27 27 0 15 0.00 15 28 0 18 0.00 18 29 0 23 0.00 23 30 0 11 0.00 11 31 0 14 0.00 14 32 0 18 0.00 18 33 0 18 0.00 18 34 0 20 0.00 20 35 0 22 0.00 22 36 0 21 0.00 21 37 0 15 0.00 15 38 0 23 0.00 23 39 0 18 0.00 18 40 0 13 0.00 13 41 0 10 0.00 10 42 0 6 0.00 6 43 1 15 6.25 16 44 0 18 0.00 18 45 1 12 7.69 13 46 0 14 0.00 14 47 0 14 0.00 14 48 1 7 12.50 8 49 0 12 0.00 12 50 0 15 0.00 15 51 0 11 0.00 11 52 0 7 0.00 7 53 0 15 0.00 15 54 0 18 0.00 18 55 0 10 0.00 10 56 0 14 0.00 14 57 0 15 0.00 15 58 0 9 0.00 9 59 0 20 0.00 20 60 0 12 0.00 12 61 0 10 0.00 10 62 0 9 0.00 9 63 0 10 0.00 10 64 0 17 0.00 17 65 0 11 0.00 11 66 0 16 0.00 16 67 0 11 0.00 11 68 0 19 0.00 19 69 0 9 0.00 9 70 0 7 0.00 7 71 0 8 0.00 8 72 0 4 0.00 4 73 0 6 0.00 6 74 0 6 0.00 6 75 0 12 0.00 12 76 0 12 0.00 12 77 0 11 0.00 11 78 0 9 0.00 9 79 0 7 0.00 7 80 0 8 0.00 8 81 0 5 0.00 5 82 0 7 0.00 7 83 0 3 0.00 3 84 0 6 0.00 6 85 0 5 0.00 5 86 0 8 0.00 8 87 0 5 0.00 5 88 0 6 0.00 6 89 0 4 0.00 4 90 0 4 0.00 4 91 0 6 0.00 6 92 0 11 0.00 11 93 0 4 0.00 4 94 0 6 0.00 6 95 1 3 25.00 4 96 0 1 0.00 1 97 0 2 0.00 2 98 0 15 0.00 15