/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-229_S36_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-229_S36_L004_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
706
Pairs without alignments under any condition
99294
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
25788
Methylated C's in CpG context
64
Methylated C's in CHG context
359
Methylated C's in CHH context
92
Methylated C's in Unknown context
3
Unmethylated C's in CpG context
7416
Unmethylated C's in CHG context
7161
Unmethylated C's in CHH context
10696
Unmethylated C's in Unknown context
10
Percentage methylation (CpG context)
0.9%
Percentage methylation (CHG context)
4.8%
Percentage methylation (CHH context)
0.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
471
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
235
original bottom strand
Deduplication
Alignments analysed
706
Unique alignments
628
Duplicates removed
78
Duplicated alignments were found at 54 different positions
