CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 2 43 4.44 45 2 0 50 0.00 50 3 1 44 2.22 45 4 0 30 0.00 30 5 0 26 0.00 26 6 0 17 0.00 17 7 0 32 0.00 32 8 0 19 0.00 19 9 0 19 0.00 19 10 0 28 0.00 28 11 0 15 0.00 15 12 0 22 0.00 22 13 0 18 0.00 18 14 0 23 0.00 23 15 0 18 0.00 18 16 0 31 0.00 31 17 0 18 0.00 18 18 0 15 0.00 15 19 0 23 0.00 23 20 1 42 2.33 43 21 0 24 0.00 24 22 1 24 4.00 25 23 1 18 5.26 19 24 0 27 0.00 27 25 0 20 0.00 20 26 0 25 0.00 25 27 0 18 0.00 18 28 0 25 0.00 25 29 0 16 0.00 16 30 0 15 0.00 15 31 0 30 0.00 30 32 0 23 0.00 23 33 0 25 0.00 25 34 0 19 0.00 19 35 1 27 3.57 28 36 0 31 0.00 31 37 0 27 0.00 27 38 0 33 0.00 33 39 0 22 0.00 22 40 0 19 0.00 19 41 0 21 0.00 21 42 1 23 4.17 24 43 0 28 0.00 28 44 0 10 0.00 10 45 2 12 14.29 14 46 0 22 0.00 22 47 0 20 0.00 20 48 1 23 4.17 24 49 1 17 5.56 18 50 0 21 0.00 21 51 1 28 3.45 29 52 1 26 3.70 27 53 1 25 3.85 26 54 0 24 0.00 24 55 1 24 4.00 25 56 1 22 4.35 23 57 0 21 0.00 21 58 0 16 0.00 16 59 1 23 4.17 24 60 0 17 0.00 17 61 0 22 0.00 22 62 0 14 0.00 14 63 1 13 7.14 14 64 0 16 0.00 16 65 0 15 0.00 15 66 0 12 0.00 12 67 0 16 0.00 16 68 0 12 0.00 12 69 0 17 0.00 17 70 0 12 0.00 12 71 0 20 0.00 20 72 0 16 0.00 16 73 1 12 7.69 13 74 0 19 0.00 19 75 0 16 0.00 16 76 0 15 0.00 15 77 0 11 0.00 11 78 0 17 0.00 17 79 0 18 0.00 18 80 0 18 0.00 18 81 0 23 0.00 23 82 1 14 6.67 15 83 0 18 0.00 18 84 0 9 0.00 9 85 0 16 0.00 16 86 0 15 0.00 15 87 0 12 0.00 12 88 1 10 9.09 11 89 0 12 0.00 12 90 0 14 0.00 14 91 1 15 6.25 16 92 0 6 0.00 6 93 0 13 0.00 13 94 0 14 0.00 14 95 1 10 9.09 11 96 0 9 0.00 9 97 0 15 0.00 15 98 0 14 0.00 14 99 0 12 0.00 12 100 0 17 0.00 17 101 0 14 0.00 14 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 35 16 68.63 51 2 17 16 51.52 33 3 7 11 38.89 18 4 0 22 0.00 22 5 1 19 5.00 20 6 0 15 0.00 15 7 0 25 0.00 25 8 1 19 5.00 20 9 0 13 0.00 13 10 0 17 0.00 17 11 0 32 0.00 32 12 1 23 4.17 24 13 1 26 3.70 27 14 0 16 0.00 16 15 0 26 0.00 26 16 1 18 5.26 19 17 0 24 0.00 24 18 0 22 0.00 22 19 0 13 0.00 13 20 0 24 0.00 24 21 0 19 0.00 19 22 1 29 3.33 30 23 0 24 0.00 24 24 1 14 6.67 15 25 1 19 5.00 20 26 2 25 7.41 27 27 2 34 5.56 36 28 0 24 0.00 24 29 1 31 3.12 32 30 0 33 0.00 33 31 1 19 5.00 20 32 0 23 0.00 23 33 1 24 4.00 25 34 1 29 3.33 30 35 1 17 5.56 18 36 0 23 0.00 23 37 0 31 0.00 31 38 3 16 15.79 19 39 0 18 0.00 18 40 0 31 0.00 31 41 0 29 0.00 29 42 0 25 0.00 25 43 0 16 0.00 16 44 0 18 0.00 18 45 0 16 0.00 16 46 0 18 0.00 18 47 1 26 3.70 27 48 0 18 0.00 18 49 0 16 0.00 16 50 0 13 0.00 13 51 0 23 0.00 23 52 0 20 0.00 20 53 1 21 4.55 22 54 1 19 5.00 20 55 0 21 0.00 21 56 1 24 4.00 25 57 0 16 0.00 16 58 0 14 0.00 14 59 1 10 9.09 11 60 0 24 0.00 24 61 0 21 0.00 21 62 0 27 0.00 27 63 1 17 5.56 18 64 0 19 0.00 19 65 0 10 0.00 10 66 0 19 0.00 19 67 1 23 4.17 24 68 1 24 4.00 25 69 1 15 6.25 16 70 1 24 4.00 25 71 0 19 0.00 19 72 0 12 0.00 12 73 0 10 0.00 10 74 0 12 0.00 12 75 0 16 0.00 16 76 1 12 7.69 13 77 0 8 0.00 8 78 0 14 0.00 14 79 0 14 0.00 14 80 0 19 0.00 19 81 0 9 0.00 9 82 0 12 0.00 12 83 0 20 0.00 20 84 0 10 0.00 10 85 0 12 0.00 12 86 0 8 0.00 8 87 0 14 0.00 14 88 1 9 10.00 10 89 0 8 0.00 8 90 2 13 13.33 15 91 1 5 16.67 6 92 1 11 8.33 12 93 1 13 7.14 14 94 0 18 0.00 18 95 1 11 8.33 12 96 0 8 0.00 8 97 1 10 9.09 11 98 1 5 16.67 6 99 1 5 16.67 6 100 0 9 0.00 9 101 0 12 0.00 12 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 5 10 33.33 15 2 1 4 20.00 5 3 1 21 4.55 22 4 0 15 0.00 15 5 3 25 10.71 28 6 2 23 8.00 25 7 3 35 7.89 38 8 0 31 0.00 31 9 0 24 0.00 24 10 0 35 0.00 35 11 0 33 0.00 33 12 0 33 0.00 33 13 0 34 0.00 34 14 0 32 0.00 32 15 0 33 0.00 33 16 0 45 0.00 45 17 0 39 0.00 39 18 0 52 0.00 52 19 1 42 2.33 43 20 0 17 0.00 17 21 0 30 0.00 30 22 0 31 0.00 31 23 0 30 0.00 30 24 0 41 0.00 41 25 0 49 0.00 49 26 0 47 0.00 47 27 0 30 0.00 30 28 0 37 0.00 37 29 1 42 2.33 43 30 0 39 0.00 39 31 1 44 2.22 45 32 0 48 0.00 48 33 0 36 0.00 36 34 1 38 2.56 39 35 1 34 2.86 35 36 0 28 0.00 28 37 1 33 2.94 34 38 0 30 0.00 30 39 0 35 0.00 35 40 0 37 0.00 37 41 0 26 0.00 26 42 0 24 0.00 24 43 0 30 0.00 30 44 0 39 0.00 39 45 0 47 0.00 47 46 0 60 0.00 60 47 0 43 0.00 43 48 1 41 2.38 42 49 0 34 0.00 34 50 0 37 0.00 37 51 0 29 0.00 29 52 0 33 0.00 33 53 0 29 0.00 29 54 0 34 0.00 34 55 0 35 0.00 35 56 0 30 0.00 30 57 0 30 0.00 30 58 0 27 0.00 27 59 0 34 0.00 34 60 0 27 0.00 27 61 1 27 3.57 28 62 0 24 0.00 24 63 0 33 0.00 33 64 0 21 0.00 21 65 0 26 0.00 26 66 0 27 0.00 27 67 1 18 5.26 19 68 0 25 0.00 25 69 0 19 0.00 19 70 0 20 0.00 20 71 0 21 0.00 21 72 0 28 0.00 28 73 0 20 0.00 20 74 0 29 0.00 29 75 0 24 0.00 24 76 1 23 4.17 24 77 0 30 0.00 30 78 0 33 0.00 33 79 0 24 0.00 24 80 0 15 0.00 15 81 0 15 0.00 15 82 0 24 0.00 24 83 1 23 4.17 24 84 1 18 5.26 19 85 1 20 4.76 21 86 0 19 0.00 19 87 0 12 0.00 12 88 0 21 0.00 21 89 1 17 5.56 18 90 0 14 0.00 14 91 0 18 0.00 18 92 0 19 0.00 19 93 0 13 0.00 13 94 0 14 0.00 14 95 0 13 0.00 13 96 0 20 0.00 20 97 0 12 0.00 12 98 0 11 0.00 11 99 0 10 0.00 10 100 0 13 0.00 13 101 0 16 0.00 16 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 9 0.00 9 2 1 6 14.29 7 3 3 18 14.29 21 4 2 7 22.22 9 5 0 19 0.00 19 6 0 8 0.00 8 7 0 10 0.00 10 8 0 8 0.00 8 9 0 9 0.00 9 10 0 14 0.00 14 11 0 10 0.00 10 12 0 8 0.00 8 13 0 6 0.00 6 14 0 8 0.00 8 15 0 10 0.00 10 16 0 8 0.00 8 17 2 11 15.38 13 18 0 11 0.00 11 19 0 6 0.00 6 20 0 14 0.00 14 21 0 10 0.00 10 22 0 6 0.00 6 23 0 11 0.00 11 24 0 5 0.00 5 25 1 8 11.11 9 26 0 7 0.00 7 27 0 7 0.00 7 28 0 8 0.00 8 29 0 12 0.00 12 30 0 5 0.00 5 31 0 7 0.00 7 32 0 11 0.00 11 33 0 4 0.00 4 34 0 3 0.00 3 35 1 2 33.33 3 36 0 1 0.00 1 37 0 4 0.00 4 38 0 7 0.00 7 39 0 3 0.00 3 40 0 4 0.00 4 41 0 4 0.00 4 42 0 9 0.00 9 43 0 9 0.00 9 44 0 8 0.00 8 45 0 2 0.00 2 46 0 3 0.00 3 47 0 5 0.00 5 48 0 5 0.00 5 49 0 4 0.00 4 50 0 7 0.00 7 51 0 5 0.00 5 52 0 5 0.00 5 53 0 2 0.00 2 54 0 2 0.00 2 55 0 1 0.00 1 56 0 2 0.00 2 57 0 2 0.00 2 58 0 4 0.00 4 59 0 6 0.00 6 60 0 1 0.00 1 61 0 7 0.00 7 62 0 3 0.00 3 63 0 2 0.00 2 64 0 6 0.00 6 65 0 6 0.00 6 66 0 3 0.00 3 67 0 3 0.00 3 68 0 0 0 69 0 3 0.00 3 70 0 3 0.00 3 71 0 1 0.00 1 72 0 2 0.00 2 73 0 3 0.00 3 74 0 2 0.00 2 75 0 3 0.00 3 76 0 3 0.00 3 77 0 1 0.00 1 78 0 3 0.00 3 79 0 4 0.00 4 80 0 1 0.00 1 81 0 0 0 82 0 3 0.00 3 83 0 1 0.00 1 84 0 5 0.00 5 85 0 1 0.00 1 86 0 3 0.00 3 87 0 0 0 88 0 2 0.00 2 89 0 0 0 90 0 3 0.00 3 91 0 3 0.00 3 92 0 1 0.00 1 93 0 1 0.00 1 94 0 1 0.00 1 95 0 1 0.00 1 96 0 0 0 97 0 2 0.00 2 98 0 1 0.00 1 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 4 33.33 6 2 1 8 11.11 9 3 4 9 30.77 13 4 1 5 16.67 6 5 0 14 0.00 14 6 0 12 0.00 12 7 0 3 0.00 3 8 0 8 0.00 8 9 0 7 0.00 7 10 0 9 0.00 9 11 0 10 0.00 10 12 1 10 9.09 11 13 0 6 0.00 6 14 0 5 0.00 5 15 1 9 10.00 10 16 0 1 0.00 1 17 1 9 10.00 10 18 0 9 0.00 9 19 0 9 0.00 9 20 0 9 0.00 9 21 0 5 0.00 5 22 0 4 0.00 4 23 0 6 0.00 6 24 0 5 0.00 5 25 0 3 0.00 3 26 0 7 0.00 7 27 1 7 12.50 8 28 0 5 0.00 5 29 1 8 11.11 9 30 0 3 0.00 3 31 0 2 0.00 2 32 0 2 0.00 2 33 0 11 0.00 11 34 0 9 0.00 9 35 0 2 0.00 2 36 0 7 0.00 7 37 0 6 0.00 6 38 0 4 0.00 4 39 0 3 0.00 3 40 0 1 0.00 1 41 0 7 0.00 7 42 0 5 0.00 5 43 0 2 0.00 2 44 0 6 0.00 6 45 0 4 0.00 4 46 0 3 0.00 3 47 0 4 0.00 4 48 0 4 0.00 4 49 0 6 0.00 6 50 0 4 0.00 4 51 0 7 0.00 7 52 0 5 0.00 5 53 0 6 0.00 6 54 0 1 0.00 1 55 0 3 0.00 3 56 0 4 0.00 4 57 0 8 0.00 8 58 0 5 0.00 5 59 0 6 0.00 6 60 0 3 0.00 3 61 0 3 0.00 3 62 0 2 0.00 2 63 0 3 0.00 3 64 0 4 0.00 4 65 0 3 0.00 3 66 0 3 0.00 3 67 0 2 0.00 2 68 3 7 30.00 10 69 0 0 0 70 0 3 0.00 3 71 0 3 0.00 3 72 0 2 0.00 2 73 0 2 0.00 2 74 0 8 0.00 8 75 0 6 0.00 6 76 0 1 0.00 1 77 0 2 0.00 2 78 0 3 0.00 3 79 0 3 0.00 3 80 0 4 0.00 4 81 0 4 0.00 4 82 0 1 0.00 1 83 0 3 0.00 3 84 0 2 0.00 2 85 1 3 25.00 4 86 0 3 0.00 3 87 0 4 0.00 4 88 0 2 0.00 2 89 0 1 0.00 1 90 0 2 0.00 2 91 0 0 0 92 0 2 0.00 2 93 0 2 0.00 2 94 0 4 0.00 4 95 1 4 20.00 5 96 0 1 0.00 1 97 0 1 0.00 1 98 0 1 0.00 1 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 6 14.29 7 2 1 6 14.29 7 3 0 4 0.00 4 4 0 1 0.00 1 5 0 8 0.00 8 6 0 4 0.00 4 7 0 14 0.00 14 8 1 18 5.26 19 9 1 12 7.69 13 10 0 23 0.00 23 11 0 16 0.00 16 12 0 15 0.00 15 13 0 18 0.00 18 14 0 18 0.00 18 15 0 16 0.00 16 16 0 18 0.00 18 17 1 12 7.69 13 18 0 14 0.00 14 19 0 9 0.00 9 20 0 9 0.00 9 21 0 6 0.00 6 22 0 9 0.00 9 23 0 12 0.00 12 24 0 9 0.00 9 25 0 11 0.00 11 26 0 13 0.00 13 27 0 5 0.00 5 28 0 13 0.00 13 29 0 13 0.00 13 30 0 12 0.00 12 31 0 11 0.00 11 32 0 9 0.00 9 33 0 9 0.00 9 34 0 14 0.00 14 35 0 9 0.00 9 36 0 13 0.00 13 37 0 9 0.00 9 38 0 7 0.00 7 39 0 10 0.00 10 40 0 14 0.00 14 41 0 7 0.00 7 42 0 6 0.00 6 43 0 9 0.00 9 44 0 6 0.00 6 45 0 9 0.00 9 46 0 11 0.00 11 47 0 9 0.00 9 48 0 8 0.00 8 49 0 10 0.00 10 50 0 5 0.00 5 51 0 5 0.00 5 52 0 7 0.00 7 53 0 9 0.00 9 54 0 14 0.00 14 55 0 7 0.00 7 56 0 8 0.00 8 57 0 6 0.00 6 58 0 7 0.00 7 59 0 8 0.00 8 60 0 4 0.00 4 61 0 7 0.00 7 62 0 3 0.00 3 63 0 4 0.00 4 64 1 6 14.29 7 65 0 2 0.00 2 66 0 3 0.00 3 67 0 6 0.00 6 68 0 7 0.00 7 69 0 7 0.00 7 70 0 4 0.00 4 71 0 6 0.00 6 72 0 3 0.00 3 73 0 7 0.00 7 74 0 6 0.00 6 75 0 3 0.00 3 76 0 3 0.00 3 77 0 5 0.00 5 78 0 5 0.00 5 79 0 5 0.00 5 80 1 6 14.29 7 81 0 2 0.00 2 82 0 7 0.00 7 83 0 6 0.00 6 84 0 9 0.00 9 85 0 5 0.00 5 86 0 6 0.00 6 87 0 4 0.00 4 88 0 10 0.00 10 89 0 5 0.00 5 90 0 3 0.00 3 91 0 4 0.00 4 92 0 6 0.00 6 93 0 5 0.00 5 94 0 4 0.00 4 95 0 6 0.00 6 96 0 3 0.00 3 97 0 4 0.00 4 98 0 8 0.00 8