/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-227_S35_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-227_S35_L004_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
393
Pairs without alignments under any condition
99607
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
14367
Methylated C's in CpG context
59
Methylated C's in CHG context
207
Methylated C's in CHH context
57
Methylated C's in Unknown context
7
Unmethylated C's in CpG context
4210
Unmethylated C's in CHG context
3866
Unmethylated C's in CHH context
5968
Unmethylated C's in Unknown context
1
Percentage methylation (CpG context)
1.4%
Percentage methylation (CHG context)
5.1%
Percentage methylation (CHH context)
0.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
270
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
123
original bottom strand
Deduplication
Alignments analysed
393
Unique alignments
368
Duplicates removed
25
Duplicated alignments were found at 22 different positions
