EPI-226_S34_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 298 lines in total Total number of methylation call strings processed: 596 Final Cytosine Methylation Report ================================= Total number of C's analysed: 7486 Total methylated C's in CpG context: 16 Total methylated C's in CHG context: 85 Total methylated C's in CHH context: 41 Total C to T conversions in CpG context: 2160 Total C to T conversions in CHG context: 2046 Total C to T conversions in CHH context: 3138 C methylated in CpG context: 0.7% C methylated in CHG context: 4.0% C methylated in CHH context: 1.3%