/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-226_S34_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-226_S34_L004_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
321
Pairs without alignments under any condition
99679
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
12469
Methylated C's in CpG context
26
Methylated C's in CHG context
152
Methylated C's in CHH context
66
Methylated C's in Unknown context
4
Unmethylated C's in CpG context
3625
Unmethylated C's in CHG context
3431
Unmethylated C's in CHH context
5169
Unmethylated C's in Unknown context
4
Percentage methylation (CpG context)
0.7%
Percentage methylation (CHG context)
4.2%
Percentage methylation (CHH context)
1.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
221
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
100
original bottom strand
Deduplication
Alignments analysed
321
Unique alignments
298
Duplicates removed
23
Duplicated alignments were found at 16 different positions
